Variant report

Variant	rs3823063
Chromosome Location	chr6:69678012-69678013
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:69668152..69668716-chr6:69677675..69678207,2	MCF-7	breast:
2	chr6:69656160..69659095-chr6:69677328..69679855,2	K562	blood:
3	chr6:69671912..69674615-chr6:69676195..69678865,4	K562	blood:
4	chr6:69676667..69679065-chr6:69686722..69689222,2	K562	blood:
5	chr6:69676667..69679537-chr6:69686722..69688400,2	K562	blood:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs16900354	1.00[AMR][1000 genomes]
rs16900381	0.92[EUR][1000 genomes]
rs16900396	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16900417	0.92[EUR][1000 genomes]
rs16900425	0.92[EUR][1000 genomes]
rs3798976	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3798981	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3799005	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3799006	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3799026	0.92[EUR][1000 genomes]
rs3799029	0.92[EUR][1000 genomes]
rs3799031	0.92[EUR][1000 genomes]
rs3799033	0.92[EUR][1000 genomes]
rs3823071	0.92[EUR][1000 genomes]
rs7453486	0.92[EUR][1000 genomes]
rs9294818	0.92[EUR][1000 genomes]
rs9342739	0.92[EUR][1000 genomes]
rs9351744	0.92[EUR][1000 genomes]
rs9360373	0.92[EUR][1000 genomes]
rs9363981	0.92[EUR][1000 genomes]
rs9363982	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5338	chr6:69670701-69701360	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69645600-69679000	Weak transcription	Fetal Brain Female	brain
2	chr6:69646000-69685000	Weak transcription	Fetal Lung	lung
3	chr6:69652200-69684600	Weak transcription	Brain Angular Gyrus	brain
4	chr6:69670200-69685000	Weak transcription	Brain Germinal Matrix	brain
5	chr6:69673200-69680600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr6:69675800-69681600	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr6:69676800-69678200	Flanking Active TSS	K562	blood
8	chr6:69676800-69678400	Enhancers	Primary hematopoietic stem cells	blood
9	chr6:69677200-69678200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
10	chr6:69677400-69678200	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr6:69677600-69678200	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr6:69677600-69678600	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr6:69677800-69678200	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chr6:69677800-69678200	Enhancers	Brain Anterior Caudate	brain
15	chr6:69677800-69678400	Enhancers	Brain Cingulate Gyrus	brain
16	chr6:69677800-69678400	Enhancers	Brain Inferior Temporal Lobe	brain
17	chr6:69677800-69678400	Enhancers	Monocytes-CD14+_RO01746	blood
18	chr6:69677800-69678400	Enhancers	Osteobl	bone
19	chr6:69677800-69678600	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr6:69678000-69678600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr6:69678000-69678600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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