Variant report

Variant	rs16900711
Chromosome Location	chr8:90809738-90809739
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:90801418..90803391-chr8:90808526..90811319,2	MCF-7	breast:
2	chr8:90808879..90811361-chr8:90813296..90815805,3	K562	blood:

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10504882	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs10504883	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16900025	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs16900480	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs16900484	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs16900581	1.00[ASN][1000 genomes]
rs16900589	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16900592	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16900617	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16900677	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs2293807	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs55697113	1.00[ASN][1000 genomes]
rs55702923	0.90[ASN][1000 genomes]
rs55881928	1.00[ASN][1000 genomes]
rs55914077	0.90[ASN][1000 genomes]
rs55945927	0.95[ASN][1000 genomes]
rs56118532	0.90[ASN][1000 genomes]
rs56275901	0.87[ASN][1000 genomes]
rs56302550	0.90[ASN][1000 genomes]
rs56716125	0.90[ASN][1000 genomes]
rs56793332	0.90[ASN][1000 genomes]
rs57701764	0.90[ASN][1000 genomes]
rs58330617	0.90[ASN][1000 genomes]
rs58972679	0.90[ASN][1000 genomes]
rs59312383	0.90[ASN][1000 genomes]
rs59581432	0.90[ASN][1000 genomes]
rs59678171	0.90[ASN][1000 genomes]
rs59924471	1.00[ASN][1000 genomes]
rs59941801	0.90[ASN][1000 genomes]
rs59988473	0.90[ASN][1000 genomes]
rs60183011	0.90[ASN][1000 genomes]
rs60327583	0.97[ASN][1000 genomes]
rs60651842	0.90[ASN][1000 genomes]
rs60691618	0.90[ASN][1000 genomes]
rs60772522	0.90[ASN][1000 genomes]
rs60959735	0.90[ASN][1000 genomes]
rs61017576	0.81[ASN][1000 genomes]
rs61044501	0.87[ASN][1000 genomes]
rs61258433	1.00[ASN][1000 genomes]
rs61450435	0.90[ASN][1000 genomes]
rs61662505	0.90[ASN][1000 genomes]
rs6998044	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7010806	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs73694459	0.87[ASN][1000 genomes]
rs73694461	0.87[ASN][1000 genomes]
rs73694462	0.87[ASN][1000 genomes]
rs73694463	0.85[ASN][1000 genomes]
rs73694485	0.95[ASN][1000 genomes]
rs73694486	0.95[ASN][1000 genomes]
rs73694487	1.00[ASN][1000 genomes]
rs73694488	1.00[ASN][1000 genomes]
rs73694490	1.00[ASN][1000 genomes]
rs73694492	1.00[ASN][1000 genomes]
rs73694493	1.00[ASN][1000 genomes]
rs73694496	0.95[ASN][1000 genomes]
rs7817339	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs7825754	0.91[ASW][hapmap]
rs7829418	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7839470	0.87[ASN][1000 genomes]
rs7839478	1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs9721216	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933502	chr8:90702392-91049100	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
2	nsv934114	chr8:90720182-90999106	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
3	nsv891181	chr8:90737258-90819998	Strong transcription Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
4	nsv891182	chr8:90785685-90888786	Flanking Active TSS Genic enhancers Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:90773000-90812400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr8:90783800-90829000	Weak transcription	Aorta	Aorta
3	chr8:90785600-90813800	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr8:90785800-90810800	Weak transcription	Fetal Brain Female	brain
5	chr8:90786000-90813000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr8:90786400-90809800	Weak transcription	HepG2	liver
7	chr8:90799400-90810200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr8:90799400-90814000	Weak transcription	Gastric	stomach
9	chr8:90799800-90811800	Weak transcription	Fetal Kidney	kidney
10	chr8:90801200-90809800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr8:90802600-90810200	Weak transcription	Fetal Intestine Large	intestine
12	chr8:90802600-90814200	Weak transcription	K562	blood
13	chr8:90803000-90811000	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr8:90803000-90813400	Weak transcription	Hela-S3	cervix
15	chr8:90803200-90810400	Weak transcription	Colonic Mucosa	Colon
16	chr8:90803600-90810400	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr8:90803600-90811200	Weak transcription	Primary T cells from cord blood	blood
18	chr8:90803600-90813800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr8:90805400-90817000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr8:90806200-90814000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr8:90806400-90810200	Weak transcription	Placenta	Placenta
22	chr8:90806400-90811600	Weak transcription	Liver	Liver
23	chr8:90806400-90814000	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr8:90806600-90811200	Weak transcription	Monocytes-CD14+_RO01746	blood
25	chr8:90807000-90812600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr8:90807200-90811200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr8:90808000-90810600	Enhancers	Muscle Satellite Cultured Cells	--
28	chr8:90808000-90814000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr8:90808200-90812000	Enhancers	Osteobl	bone
30	chr8:90808400-90810000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr8:90808400-90810000	Enhancers	NH-A	brain
32	chr8:90808400-90810000	Enhancers	NHEK	skin
33	chr8:90808400-90810200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr8:90808400-90810400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr8:90808400-90810400	Enhancers	NHLF	lung
36	chr8:90808400-90810600	Enhancers	HMEC	breast
37	chr8:90808400-90810800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr8:90808400-90812000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr8:90808400-90812000	Enhancers	NHDF-Ad	bronchial
40	chr8:90808600-90810000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr8:90808800-90809800	Weak transcription	HSMM	muscle
42	chr8:90808800-90813800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr8:90809000-90810400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr8:90809200-90809800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
45	chr8:90809200-90810000	Enhancers	Sigmoid Colon	Sigmoid Colon
46	chr8:90809400-90809800	Weak transcription	Primary B cells from peripheral blood	blood
47	chr8:90809400-90810200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr8:90809600-90809800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr8:90809600-90809800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
50	chr8:90809600-90810000	Flanking Active TSS	A549	lung

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