Variant report

Variant	rs73694461
Chromosome Location	chr8:90739734-90739735
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:90738912..90741485-chr8:91017416..91019883,2	K562	blood:
2	chr8:90738336..90739847-chr8:90952483..90954708,2	MCF-7	breast:
3	chr8:90736815..90743993-chr8:90765696..90773918,18	MCF-7	breast:
4	chr8:90732925..90737686-chr8:90738407..90742912,6	K562	blood:
5	chr8:90732834..90736227-chr8:90736670..90741646,5	MCF-7	breast:
6	chr8:90738830..90741040-chr8:90913929..90916655,2	K562	blood:
7	chr8:90714137..90717056-chr8:90737564..90740115,2	K562	blood:
8	chr8:90735002..90740593-chr8:90994599..90998168,11	MCF-7	breast:
9	chr8:90734885..90744209-chr8:90767977..90774247,14	MCF-7	breast:
10	chr8:90735826..90740064-chr8:90995306..90998250,3	MCF-7	breast:
11	chr8:90737440..90740963-chr8:90912985..90916304,5	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000104312	Chromatin interaction
ENSG00000207359	Chromatin interaction
ENSG00000251136	Chromatin interaction
ENSG00000104320	Chromatin interaction
ENSG00000164823	Chromatin interaction

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10504882	0.97[ASN][1000 genomes]
rs10504883	0.87[ASN][1000 genomes]
rs16900025	1.00[ASN][1000 genomes]
rs16900480	0.97[ASN][1000 genomes]
rs16900484	0.97[ASN][1000 genomes]
rs16900581	0.97[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs16900589	0.87[ASN][1000 genomes]
rs16900592	0.87[ASN][1000 genomes]
rs16900617	0.87[ASN][1000 genomes]
rs16900677	0.87[ASN][1000 genomes]
rs16900711	0.87[ASN][1000 genomes]
rs2293807	0.97[ASN][1000 genomes]
rs55697113	0.87[ASN][1000 genomes]
rs55702923	0.97[ASN][1000 genomes]
rs55881928	0.87[ASN][1000 genomes]
rs55914077	0.97[ASN][1000 genomes]
rs55945927	0.92[ASN][1000 genomes]
rs56118532	0.97[ASN][1000 genomes]
rs56275901	0.95[ASN][1000 genomes]
rs56302550	0.97[ASN][1000 genomes]
rs56716125	0.97[ASN][1000 genomes]
rs56793332	0.97[ASN][1000 genomes]
rs57701764	0.97[ASN][1000 genomes]
rs58330617	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs58972679	0.97[ASN][1000 genomes]
rs59312383	0.97[ASN][1000 genomes]
rs59581432	0.98[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs59678171	0.97[ASN][1000 genomes]
rs59924471	0.87[ASN][1000 genomes]
rs59941801	0.97[ASN][1000 genomes]
rs59988473	0.97[ASN][1000 genomes]
rs60183011	0.97[ASN][1000 genomes]
rs60327583	0.85[ASN][1000 genomes]
rs60651842	0.97[ASN][1000 genomes]
rs60691618	0.97[ASN][1000 genomes]
rs60772522	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs60959735	0.97[ASN][1000 genomes]
rs61017576	0.93[ASN][1000 genomes]
rs61044501	1.00[ASN][1000 genomes]
rs61258433	0.87[ASN][1000 genomes]
rs61450435	0.97[ASN][1000 genomes]
rs61662505	0.97[ASN][1000 genomes]
rs6998044	0.97[ASN][1000 genomes]
rs7010806	0.97[ASN][1000 genomes]
rs73694459	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73694462	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73694463	0.97[ASN][1000 genomes]
rs73694485	0.92[ASN][1000 genomes]
rs73694486	0.92[ASN][1000 genomes]
rs73694487	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs73694488	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs73694490	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs73694492	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs73694493	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs73694496	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7817339	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7829418	0.97[ASN][1000 genomes]
rs7839470	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7839478	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9721216	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831389	chr8:90575517-90753120	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv1031578	chr8:90670102-90757821	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv891180	chr8:90697810-90802491	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
4	nsv933502	chr8:90702392-91049100	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
5	nsv6294	chr8:90705780-90750101	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv934114	chr8:90720182-90999106	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
7	esv3479599	chr8:90736894-90741021	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	esv3479598	chr8:90736917-90741003	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	esv3479600	chr8:90736917-90741003	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
10	nsv891181	chr8:90737258-90819998	Strong transcription Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:90713200-90741200	Weak transcription	Left Ventricle	heart
2	chr8:90713600-90756200	Weak transcription	Pancreas	Pancrea
3	chr8:90714200-90741400	Weak transcription	Right Ventricle	heart
4	chr8:90714400-90741000	Weak transcription	Gastric	stomach
5	chr8:90715400-90741200	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr8:90717200-90741000	Weak transcription	Stomach Smooth Muscle	stomach
7	chr8:90717800-90747800	Weak transcription	Ovary	ovary
8	chr8:90720800-90742400	Weak transcription	Fetal Lung	lung
9	chr8:90721000-90740000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr8:90721400-90740400	Weak transcription	Fetal Intestine Large	intestine
11	chr8:90725200-90740400	Weak transcription	Small Intestine	intestine
12	chr8:90726600-90741400	Weak transcription	Esophagus	oesophagus
13	chr8:90733600-90741200	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr8:90734000-90741200	Weak transcription	Liver	Liver
15	chr8:90734200-90739800	Weak transcription	Fetal Stomach	stomach
16	chr8:90734200-90741200	Weak transcription	Placenta	Placenta
17	chr8:90734400-90740800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr8:90735400-90741200	Weak transcription	Primary T cells from cord blood	blood
19	chr8:90735800-90740800	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr8:90736000-90740800	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr8:90736200-90740000	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr8:90737000-90740200	Weak transcription	Fetal Muscle Trunk	muscle
23	chr8:90737000-90741000	Weak transcription	Adipose Nuclei	Adipose
24	chr8:90737000-90741400	Weak transcription	Fetal Muscle Leg	muscle
25	chr8:90737200-90741400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr8:90737800-90740000	Enhancers	NHDF-Ad	bronchial
27	chr8:90737800-90740200	Enhancers	Muscle Satellite Cultured Cells	--
28	chr8:90737800-90740200	Enhancers	NHEK	skin
29	chr8:90737800-90741000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr8:90738000-90739800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr8:90738000-90740000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr8:90738000-90740200	Enhancers	NHLF	lung
33	chr8:90738000-90740400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
34	chr8:90738000-90740600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr8:90738000-90740800	Weak transcription	Primary hematopoietic stem cells	blood
36	chr8:90738000-90741000	Enhancers	Primary T helper cells PMA-I stimulated	--
37	chr8:90738000-90741400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr8:90738200-90740200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr8:90738200-90741000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
40	chr8:90738200-90741000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr8:90738200-90741400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr8:90738400-90739800	Flanking Active TSS	GM12878-XiMat	blood
43	chr8:90738400-90740800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr8:90738400-90740800	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr8:90738400-90741400	Weak transcription	Right Atrium	heart
46	chr8:90738600-90740400	Weak transcription	K562	blood
47	chr8:90738600-90740600	Weak transcription	Primary monocytes fromperipheralblood	blood
48	chr8:90738600-90740600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
49	chr8:90738600-90740600	Weak transcription	Fetal Heart	heart
50	chr8:90738600-90740800	Weak transcription	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links