Variant report

Variant	rs59988473
Chromosome Location	chr8:90755881-90755882
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:90752983..90756516-chr8:90768798..90771360,4	MCF-7	breast:
2	chr8:90755566..90757236-chr8:90995728..90997955,2	MCF-7	breast:
3	chr8:90753685..90756450-chr8:90766720..90768459,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000251136	Chromatin interaction
ENSG00000104312	Chromatin interaction
ENSG00000104320	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10504882	1.00[ASN][1000 genomes]
rs10504883	0.90[ASN][1000 genomes]
rs16900025	0.97[ASN][1000 genomes]
rs16900480	1.00[ASN][1000 genomes]
rs16900484	1.00[ASN][1000 genomes]
rs16900581	0.90[ASN][1000 genomes]
rs16900589	0.90[ASN][1000 genomes]
rs16900592	0.90[ASN][1000 genomes]
rs16900617	0.90[ASN][1000 genomes]
rs16900677	0.90[ASN][1000 genomes]
rs16900711	0.90[ASN][1000 genomes]
rs2293807	1.00[ASN][1000 genomes]
rs55697113	0.90[ASN][1000 genomes]
rs55702923	1.00[ASN][1000 genomes]
rs55881928	0.90[ASN][1000 genomes]
rs55914077	1.00[ASN][1000 genomes]
rs55945927	0.95[ASN][1000 genomes]
rs56118532	1.00[ASN][1000 genomes]
rs56275901	0.97[ASN][1000 genomes]
rs56302550	1.00[ASN][1000 genomes]
rs56716125	1.00[ASN][1000 genomes]
rs56793332	1.00[ASN][1000 genomes]
rs57701764	1.00[ASN][1000 genomes]
rs58330617	1.00[ASN][1000 genomes]
rs58972679	1.00[ASN][1000 genomes]
rs59312383	1.00[ASN][1000 genomes]
rs59581432	1.00[ASN][1000 genomes]
rs59678171	1.00[ASN][1000 genomes]
rs59924471	0.90[ASN][1000 genomes]
rs59941801	1.00[ASN][1000 genomes]
rs60183011	1.00[ASN][1000 genomes]
rs60327583	0.87[ASN][1000 genomes]
rs60651842	1.00[ASN][1000 genomes]
rs60691618	1.00[ASN][1000 genomes]
rs60772522	1.00[ASN][1000 genomes]
rs60959735	1.00[ASN][1000 genomes]
rs61017576	0.90[ASN][1000 genomes]
rs61044501	0.97[ASN][1000 genomes]
rs61258433	0.90[ASN][1000 genomes]
rs61450435	1.00[ASN][1000 genomes]
rs61662505	1.00[ASN][1000 genomes]
rs6998044	1.00[ASN][1000 genomes]
rs7010806	1.00[ASN][1000 genomes]
rs73694459	0.97[ASN][1000 genomes]
rs73694461	0.97[ASN][1000 genomes]
rs73694462	0.97[ASN][1000 genomes]
rs73694463	0.95[ASN][1000 genomes]
rs73694485	0.95[ASN][1000 genomes]
rs73694486	0.95[ASN][1000 genomes]
rs73694487	0.90[ASN][1000 genomes]
rs73694488	0.90[ASN][1000 genomes]
rs73694490	0.90[ASN][1000 genomes]
rs73694492	0.90[ASN][1000 genomes]
rs73694493	0.90[ASN][1000 genomes]
rs73694496	0.85[ASN][1000 genomes]
rs7817339	0.97[ASN][1000 genomes]
rs7829418	1.00[ASN][1000 genomes]
rs7839470	0.97[ASN][1000 genomes]
rs7839478	0.97[ASN][1000 genomes]
rs9721216	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031578	chr8:90670102-90757821	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv891180	chr8:90697810-90802491	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
3	nsv933502	chr8:90702392-91049100	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	62 gene(s)	inside rSNPs	diseases
4	nsv934114	chr8:90720182-90999106	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	58 gene(s)	inside rSNPs	diseases
5	nsv891181	chr8:90737258-90819998	Strong transcription Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:90713600-90756200	Weak transcription	Pancreas	Pancrea
2	chr8:90741600-90768200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr8:90742600-90767600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr8:90742800-90762200	Weak transcription	Aorta	Aorta
5	chr8:90746200-90767800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr8:90748400-90758200	Weak transcription	Ovary	ovary
7	chr8:90749600-90762200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr8:90749600-90768200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr8:90749800-90767800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr8:90749800-90768000	Weak transcription	Left Ventricle	heart
11	chr8:90749800-90768000	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr8:90750000-90769000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr8:90750400-90761000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr8:90750600-90756200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr8:90752600-90756200	Weak transcription	Fetal Stomach	stomach
16	chr8:90754800-90759000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr8:90755000-90762400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr8:90755000-90767200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr8:90755200-90766600	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr8:90755400-90766400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr8:90755600-90766600	Weak transcription	Muscle Satellite Cultured Cells	--

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