Variant report

Variant	rs16907238
Chromosome Location	chr11:9922604-9922605
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10500710	0.83[JPT][hapmap]
rs10500711	0.84[JPT][hapmap];0.83[YRI][hapmap]
rs10500713	1.00[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10500714	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12576435	0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1546543	0.85[JPT][hapmap];0.84[YRI][hapmap]
rs16907215	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16907241	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16907248	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16907257	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs171493	0.84[JPT][hapmap]
rs1996062	0.92[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs360162	0.84[JPT][hapmap];0.84[YRI][hapmap]
rs360163	0.85[JPT][hapmap];0.84[YRI][hapmap]
rs360166	0.83[JPT][hapmap]
rs360169	0.84[JPT][hapmap]
rs4463836	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4542406	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59550065	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60517573	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs938163	0.89[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	esv2762895	chr11:9849511-9954549	Flanking Active TSS Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv896988	chr11:9912052-10012511	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9878800-9952200	Weak transcription	Aorta	Aorta
2	chr11:9882400-9929600	Weak transcription	Primary T cells from cord blood	blood
3	chr11:9894400-9978600	Weak transcription	Left Ventricle	heart
4	chr11:9904000-9937000	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr11:9910000-9954600	Weak transcription	Pancreas	Pancrea
6	chr11:9913600-9928800	Weak transcription	Right Ventricle	heart
7	chr11:9913800-9927400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr11:9914200-9926800	Weak transcription	Brain Cingulate Gyrus	brain
9	chr11:9914400-9927600	Weak transcription	Brain Anterior Caudate	brain
10	chr11:9915000-9937200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr11:9915400-9923200	Weak transcription	HSMMtube	muscle
12	chr11:9915400-9926800	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr11:9915400-9927600	Weak transcription	Colon Smooth Muscle	Colon
14	chr11:9915600-9923400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr11:9915800-9923000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr11:9916600-9923000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr11:9916600-9925200	Weak transcription	Lung	lung
18	chr11:9916600-9932600	Weak transcription	Fetal Intestine Small	intestine
19	chr11:9916800-9922800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr11:9916800-9923600	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr11:9916800-9925000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr11:9916800-9944400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr11:9916800-9944400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr11:9917000-9923800	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr11:9917000-9927600	Weak transcription	Duodenum Mucosa	Duodenum
26	chr11:9917000-9937200	Weak transcription	Fetal Muscle Trunk	muscle
27	chr11:9917200-9922800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr11:9917200-9923000	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr11:9917200-9925000	Weak transcription	Ovary	ovary
30	chr11:9917200-9927400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr11:9917400-9928000	Weak transcription	Brain Hippocampus Middle	brain
32	chr11:9917600-9924000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr11:9917600-9927200	Weak transcription	Fetal Intestine Large	intestine
34	chr11:9917600-9927600	Weak transcription	Fetal Lung	lung
35	chr11:9917600-9928200	Weak transcription	Liver	Liver
36	chr11:9917600-9928200	Weak transcription	Fetal Heart	heart
37	chr11:9917600-9933200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr11:9917600-9934200	Weak transcription	Skeletal Muscle Female	skeletal muscle
39	chr11:9917600-9951800	Weak transcription	Stomach Smooth Muscle	stomach
40	chr11:9917600-9952400	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr11:9917800-9926400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
42	chr11:9917800-9927400	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr11:9917800-9927400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr11:9917800-9927600	Weak transcription	Adipose Nuclei	Adipose
45	chr11:9917800-9933200	Weak transcription	Primary hematopoietic stem cells	blood
46	chr11:9917800-9952600	Weak transcription	Duodenum Smooth Muscle	Duodenum
47	chr11:9918400-9923400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
48	chr11:9920000-9933200	Weak transcription	Fetal Stomach	stomach
49	chr11:9920600-9923200	Enhancers	NHEK	skin
50	chr11:9920800-9925200	Weak transcription	HUVEC	blood vessel

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