Variant report

Variant	rs360166
Chromosome Location	chr11:9877509-9877510
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10500710	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs10500711	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs10500714	0.85[JPT][hapmap]
rs11820989	0.93[ASN][1000 genomes]
rs1546543	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs16907215	0.84[JPT][hapmap]
rs16907238	0.83[JPT][hapmap]
rs16907241	0.85[JPT][hapmap]
rs16907248	0.84[JPT][hapmap]
rs171493	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1996062	0.80[CEU][hapmap];0.84[JPT][hapmap]
rs360162	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs360163	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs360168	0.91[ASN][1000 genomes]
rs360169	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4463836	0.84[JPT][hapmap]
rs4542406	0.84[JPT][hapmap]
rs57321195	0.90[ASN][1000 genomes]
rs61876913	0.97[ASN][1000 genomes]
rs7115754	0.84[CEU][hapmap];0.83[EUR][1000 genomes]
rs938163	0.86[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv896987	chr11:9759918-9885849	Strong transcription Enhancers Genic enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	esv3384280	chr11:9766350-9911228	Flanking Bivalent TSS/Enh Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	esv2762895	chr11:9849511-9954549	Flanking Active TSS Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9818600-9881400	Weak transcription	Spleen	Spleen
2	chr11:9830400-9880400	Weak transcription	Thymus	Thymus
3	chr11:9830800-9880600	Weak transcription	Fetal Brain Male	brain
4	chr11:9833600-9878800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr11:9837600-9885800	Weak transcription	Hela-S3	cervix
6	chr11:9838600-9879800	Weak transcription	Fetal Thymus	thymus
7	chr11:9851200-9880000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr11:9851600-9880400	Weak transcription	Small Intestine	intestine
9	chr11:9854000-9880600	Weak transcription	Colonic Mucosa	Colon
10	chr11:9856600-9880000	Weak transcription	Fetal Heart	heart
11	chr11:9859800-9880200	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr11:9861400-9879600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr11:9861400-9879800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr11:9861400-9879800	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr11:9861400-9880800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr11:9863000-9879800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr11:9863400-9877600	Weak transcription	HMEC	breast
18	chr11:9863400-9880000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr11:9863600-9879800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr11:9863800-9883800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr11:9865000-9879800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
22	chr11:9866000-9880400	Weak transcription	Esophagus	oesophagus
23	chr11:9866000-9880400	Weak transcription	Pancreas	Pancrea
24	chr11:9868600-9883400	Weak transcription	HSMMtube	muscle
25	chr11:9868800-9879800	Weak transcription	Primary T helper cells PMA-I stimulated	--
26	chr11:9870600-9878400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
27	chr11:9872200-9879600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr11:9873400-9878400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr11:9873400-9878400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr11:9873600-9878200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr11:9873600-9880000	Strong transcription	Primary monocytes fromperipheralblood	blood
32	chr11:9874200-9877800	Weak transcription	NH-A	brain
33	chr11:9874200-9878200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr11:9874400-9877600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
35	chr11:9874800-9878200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr11:9875000-9878000	Strong transcription	HSMM	muscle
37	chr11:9875000-9878200	Strong transcription	Dnd41	blood
38	chr11:9875200-9878200	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr11:9875200-9878200	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr11:9875200-9878200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr11:9875200-9880800	Enhancers	Primary B cells from cord blood	blood
42	chr11:9875400-9877600	Strong transcription	Primary T helper cells fromperipheralblood	blood
43	chr11:9875400-9877800	Strong transcription	Fetal Brain Female	brain
44	chr11:9875400-9878400	Strong transcription	Primary hematopoietic stem cells	blood
45	chr11:9875400-9879000	Weak transcription	HUVEC	blood vessel
46	chr11:9875400-9881400	Enhancers	Primary B cells from peripheral blood	blood
47	chr11:9875600-9878000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
48	chr11:9875600-9878200	Strong transcription	Primary T cells from cord blood	blood
49	chr11:9875600-9878400	Strong transcription	Ovary	ovary
50	chr11:9875600-9879000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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