Variant report

Variant	rs360162
Chromosome Location	chr11:9884787-9884788
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10500710	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10500711	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10500713	0.87[YRI][hapmap]
rs10500714	0.85[JPT][hapmap];0.87[YRI][hapmap]
rs11820989	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1546543	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs16907215	0.85[JPT][hapmap];0.86[YRI][hapmap]
rs16907238	0.84[JPT][hapmap];0.84[YRI][hapmap]
rs16907241	0.85[JPT][hapmap];0.87[YRI][hapmap]
rs16907248	0.85[JPT][hapmap];0.86[YRI][hapmap]
rs171493	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs1996062	0.85[JPT][hapmap]
rs360163	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs360166	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs360168	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs360169	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs4463836	0.85[JPT][hapmap];0.85[YRI][hapmap]
rs4542406	0.85[JPT][hapmap];0.86[YRI][hapmap]
rs57321195	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60701769	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs61876913	0.98[ASN][1000 genomes]
rs938163	0.87[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv896987	chr11:9759918-9885849	Strong transcription Enhancers Genic enhancers Flanking Active TSS Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	esv3384280	chr11:9766350-9911228	Flanking Bivalent TSS/Enh Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	esv2762895	chr11:9849511-9954549	Flanking Active TSS Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9837600-9885800	Weak transcription	Hela-S3	cervix
2	chr11:9877600-9890200	Weak transcription	Brain Anterior Caudate	brain
3	chr11:9877800-9897000	Weak transcription	Psoas Muscle	Psoas
4	chr11:9878200-9892000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr11:9878200-9897000	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr11:9878400-9891800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr11:9878400-9893200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr11:9878400-9916200	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr11:9878800-9952200	Weak transcription	Aorta	Aorta
10	chr11:9879200-9886000	Enhancers	NHDF-Ad	bronchial
11	chr11:9880000-9891600	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr11:9880200-9913200	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr11:9880600-9884800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr11:9880600-9884800	Weak transcription	Lung	lung
15	chr11:9880600-9892200	Weak transcription	Fetal Stomach	stomach
16	chr11:9880600-9893800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr11:9880600-9896400	Weak transcription	Rectal Smooth Muscle	rectum
18	chr11:9880600-9897200	Weak transcription	Ovary	ovary
19	chr11:9880600-9914800	Weak transcription	Placenta	Placenta
20	chr11:9880800-9892000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr11:9880800-9902200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr11:9881000-9885400	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr11:9881000-9892000	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr11:9881400-9884800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr11:9881400-9884800	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr11:9881400-9885400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
27	chr11:9881400-9885400	Enhancers	A549	lung
28	chr11:9881800-9893600	Weak transcription	Adipose Nuclei	Adipose
29	chr11:9881800-9893600	Weak transcription	Fetal Lung	lung
30	chr11:9882000-9885000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr11:9882400-9929600	Weak transcription	Primary T cells from cord blood	blood
32	chr11:9883200-9885600	Enhancers	Osteobl	bone
33	chr11:9883400-9885000	Enhancers	HUES6 Cell Line	embryonic stem cell
34	chr11:9883400-9885000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr11:9883400-9885000	Enhancers	Muscle Satellite Cultured Cells	--
36	chr11:9883400-9885200	Enhancers	ES-I3 Cell Line	embryonic stem cell
37	chr11:9883400-9885200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr11:9883400-9885200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr11:9883400-9885600	Enhancers	iPS-18 Cell Line	embryonic stem cell
40	chr11:9883400-9885800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr11:9883600-9884800	Enhancers	iPS-20b Cell Line	embryonic stem cell
42	chr11:9883600-9885000	Enhancers	iPS-15b Cell Line	embryonic stem cell
43	chr11:9883600-9885000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr11:9883600-9885200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr11:9883600-9885400	Enhancers	HUES48 Cell Line	embryonic stem cell
46	chr11:9883600-9885400	Enhancers	HUES64 Cell Line	embryonic stem cell
47	chr11:9883600-9886000	Enhancers	HUVEC	blood vessel
48	chr11:9883600-9887600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr11:9883800-9884800	Weak transcription	NH-A	brain
50	chr11:9883800-9885000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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