Variant report

Variant	rs938163
Chromosome Location	chr11:9914642-9914643
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10500710	0.87[JPT][hapmap]
rs10500711	0.87[JPT][hapmap]
rs10500713	0.92[JPT][hapmap];0.99[ASN][1000 genomes]
rs10500714	0.89[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs11608212	0.83[EUR][1000 genomes]
rs12576435	0.97[ASN][1000 genomes]
rs1546543	0.87[JPT][hapmap]
rs16907215	0.89[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs16907238	0.89[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs16907241	0.89[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs16907248	0.89[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs16907257	0.99[ASN][1000 genomes]
rs171493	0.87[JPT][hapmap]
rs17271223	0.82[EUR][1000 genomes]
rs17355751	0.82[EUR][1000 genomes]
rs17356069	0.82[EUR][1000 genomes]
rs17356237	0.83[EUR][1000 genomes]
rs1996062	1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs360162	0.87[JPT][hapmap]
rs360163	0.87[JPT][hapmap]
rs360166	0.86[JPT][hapmap]
rs360169	0.87[JPT][hapmap]
rs4463836	0.89[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs4542406	0.89[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs55811615	0.82[EUR][1000 genomes]
rs59550065	0.99[ASN][1000 genomes]
rs60517573	0.99[ASN][1000 genomes]
rs61876922	0.82[EUR][1000 genomes]
rs61876923	0.82[EUR][1000 genomes]
rs61876926	0.83[EUR][1000 genomes]
rs61876927	0.82[EUR][1000 genomes]
rs6483792	0.82[EUR][1000 genomes]
rs7130478	0.82[EUR][1000 genomes]
rs7928664	0.83[EUR][1000 genomes]
rs7935610	0.83[EUR][1000 genomes]
rs7939269	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933855	chr11:9645441-10130519	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	esv2762895	chr11:9849511-9954549	Flanking Active TSS Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv896988	chr11:9912052-10012511	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:9878400-9916200	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr11:9878800-9952200	Weak transcription	Aorta	Aorta
3	chr11:9880600-9914800	Weak transcription	Placenta	Placenta
4	chr11:9882400-9929600	Weak transcription	Primary T cells from cord blood	blood
5	chr11:9890600-9915200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr11:9891400-9916800	Weak transcription	Primary B cells from cord blood	blood
7	chr11:9891800-9916600	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr11:9892400-9921200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr11:9894200-9915200	Weak transcription	Fetal Muscle Trunk	muscle
10	chr11:9894400-9916600	Weak transcription	Primary hematopoietic stem cells	blood
11	chr11:9894400-9978600	Weak transcription	Left Ventricle	heart
12	chr11:9897000-9915000	Weak transcription	HSMMtube	muscle
13	chr11:9898200-9914800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr11:9898200-9917000	Weak transcription	Stomach Smooth Muscle	stomach
15	chr11:9898600-9914800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr11:9898800-9915200	Weak transcription	Fetal Intestine Small	intestine
17	chr11:9899400-9915000	Weak transcription	Liver	Liver
18	chr11:9900600-9915000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr11:9901200-9915000	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr11:9901200-9916600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr11:9902200-9917400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr11:9903400-9915000	Weak transcription	Fetal Muscle Leg	muscle
23	chr11:9903600-9915200	Weak transcription	Ovary	ovary
24	chr11:9903600-9916600	Weak transcription	Fetal Lung	lung
25	chr11:9904000-9937000	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr11:9906000-9915000	Weak transcription	Fetal Intestine Large	intestine
27	chr11:9906400-9914800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr11:9906400-9915000	Weak transcription	Osteobl	bone
29	chr11:9906800-9920400	Weak transcription	HUVEC	blood vessel
30	chr11:9907000-9914800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr11:9908400-9915000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr11:9909200-9915000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr11:9909400-9915000	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr11:9909400-9916800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr11:9909600-9914800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr11:9909800-9916600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr11:9910000-9954600	Weak transcription	Pancreas	Pancrea
38	chr11:9910200-9921000	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr11:9910800-9915000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
40	chr11:9910800-9915000	Weak transcription	HSMM	muscle
41	chr11:9911000-9914800	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr11:9911000-9914800	Weak transcription	HUES64 Cell Line	embryonic stem cell
43	chr11:9911600-9919200	Weak transcription	Fetal Brain Female	brain
44	chr11:9911800-9915000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr11:9911800-9921200	Weak transcription	HMEC	breast
46	chr11:9912800-9914800	Weak transcription	Rectal Mucosa Donor 31	rectum
47	chr11:9913000-9914800	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr11:9913200-9914800	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr11:9913200-9916400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr11:9913400-9914800	Weak transcription	A549	lung

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