The 2.0 version of rSNPBase

Variant report

Variant rs16908050
Chromosome Location chr12:12582884-12582885
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:62 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr12:12558000-12586000 Weak transcription Pancreas Pancrea
2 chr12:12565200-12585000 Weak transcription Rectal Mucosa Donor 29 rectum
3 chr12:12572600-12588400 Weak transcription Primary T cells from cord blood blood
4 chr12:12577600-12583800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
5 chr12:12577800-12584000 Weak transcription Primary T helper naive cells fromperipheralblood blood
6 chr12:12578200-12588600 Weak transcription Primary B cells from cord blood blood
7 chr12:12578400-12586600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
8 chr12:12578400-12588200 Weak transcription Primary B cells from peripheral blood blood
9 chr12:12578800-12586200 Weak transcription Brain Hippocampus Middle brain
10 chr12:12578800-12589200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
11 chr12:12579000-12583400 Weak transcription NHLF lung
12 chr12:12579000-12583800 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
13 chr12:12579200-12585200 Weak transcription Rectal Smooth Muscle rectum
14 chr12:12579400-12585000 Weak transcription Duodenum Smooth Muscle Duodenum
15 chr12:12579400-12587000 Weak transcription Psoas Muscle Psoas
16 chr12:12579600-12583800 Weak transcription Fetal Stomach stomach
17 chr12:12579600-12585200 Weak transcription Stomach Mucosa stomach
18 chr12:12579600-12586600 Weak transcription Fetal Intestine Large intestine
19 chr12:12580000-12588600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
20 chr12:12580200-12583800 Weak transcription Primary T killer memory cells from peripheral blood blood
21 chr12:12580600-12583000 Enhancers GM12878-XiMat blood
22 chr12:12580600-12583200 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
23 chr12:12580600-12584400 Enhancers HMEC breast
24 chr12:12580800-12583400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
25 chr12:12580800-12587400 Enhancers Primary T helper memory cells from peripheral blood 2 blood
26 chr12:12581000-12586000 Weak transcription Esophagus oesophagus
27 chr12:12581200-12587000 Enhancers NHEK skin
28 chr12:12581600-12588800 Weak transcription Primary neutrophils fromperipheralblood blood
29 chr12:12581800-12583000 Enhancers Primary T cells fromperipheralblood blood
30 chr12:12581800-12583200 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
31 chr12:12581800-12583200 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
32 chr12:12582000-12583000 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
33 chr12:12582000-12583000 Enhancers Placenta Placenta
34 chr12:12582000-12583000 Enhancers HSMMtube muscle
35 chr12:12582000-12589200 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
36 chr12:12582200-12583800 Enhancers Fetal Lung lung
37 chr12:12582200-12584600 Enhancers Primary T helper memory cells from peripheral blood 1 blood
38 chr12:12582400-12583000 Enhancers Sigmoid Colon Sigmoid Colon
39 chr12:12582400-12583000 Enhancers Thymus Thymus
40 chr12:12582400-12583800 Weak transcription A549 lung
41 chr12:12582400-12585200 Weak transcription HepG2 liver
42 chr12:12582600-12583000 Flanking Active TSS Primary T helper 17 cells PMA-I stimulated --
43 chr12:12582600-12583000 Enhancers HSMM muscle
44 chr12:12582600-12583200 Enhancers Breast Myoepithelial Primary Cells Breast
45 chr12:12582600-12583200 Enhancers Primary T helper naive cells from peripheral blood blood
46 chr12:12582600-12583200 Enhancers Primary T helper cells PMA-I stimulated --
47 chr12:12582600-12583800 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
48 chr12:12582600-12583800 Weak transcription Osteobl bone
49 chr12:12582600-12584400 Enhancers Primary T regulatory cells fromperipheralblood blood
50 chr12:12582600-12585400 Weak transcription Aorta Aorta

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Last update: Aug 31, 2015