Variant report

Variant	rs11829916
Chromosome Location	chr12:12572293-12572294
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs1019340	0.85[ASN][1000 genomes]
rs1019341	0.85[ASN][1000 genomes]
rs1030069	0.83[ASN][1000 genomes]
rs10459098	0.85[ASN][1000 genomes]
rs10505765	0.83[ASN][1000 genomes]
rs10743985	0.85[ASN][1000 genomes]
rs10772563	0.85[ASN][1000 genomes]
rs10845533	0.85[ASN][1000 genomes]
rs10845537	0.85[ASN][1000 genomes]
rs10845539	0.85[ASN][1000 genomes]
rs10845540	0.81[ASN][1000 genomes]
rs10845541	0.85[ASN][1000 genomes]
rs10845545	0.85[ASN][1000 genomes]
rs10845546	0.85[ASN][1000 genomes]
rs11054894	0.85[ASN][1000 genomes]
rs11532310	0.83[ASN][1000 genomes]
rs11561172	0.81[ASN][1000 genomes]
rs11609375	0.82[ASN][1000 genomes]
rs1468876	0.85[ASN][1000 genomes]
rs16908050	0.88[ASN][1000 genomes]
rs16908059	0.87[ASN][1000 genomes]
rs16908062	0.87[ASN][1000 genomes]
rs16908072	0.87[ASN][1000 genomes]
rs16908076	0.87[ASN][1000 genomes]
rs16908101	0.85[ASN][1000 genomes]
rs2193269	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2193270	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2216264	0.83[ASN][1000 genomes]
rs28853875	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3925170	0.85[ASN][1000 genomes]
rs4390432	0.83[ASN][1000 genomes]
rs4488294	0.85[ASN][1000 genomes]
rs4547192	0.85[ASN][1000 genomes]
rs4763825	0.85[ASN][1000 genomes]
rs4763826	0.85[ASN][1000 genomes]
rs4763829	0.83[ASN][1000 genomes]
rs4763830	0.82[ASN][1000 genomes]
rs56089442	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56701819	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56796062	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56915387	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57348917	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60253266	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61543155	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6488526	0.85[ASN][1000 genomes]
rs7135655	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7300150	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7309503	0.85[ASN][1000 genomes]
rs7309982	0.82[ASN][1000 genomes]
rs7311364	0.85[ASN][1000 genomes]
rs7313825	0.82[ASN][1000 genomes]
rs7315626	0.85[ASN][1000 genomes]
rs73283441	0.85[ASN][1000 genomes]
rs7954752	0.85[ASN][1000 genomes]
rs7961703	0.84[ASN][1000 genomes]
rs7967038	0.85[ASN][1000 genomes]
rs7967111	0.88[ASN][1000 genomes]
rs7969020	0.85[ASN][1000 genomes]
rs7969252	0.85[ASN][1000 genomes]
rs7969270	0.85[ASN][1000 genomes]
rs7969849	0.85[ASN][1000 genomes]
rs7969984	0.85[ASN][1000 genomes]
rs879445	0.85[ASN][1000 genomes]
rs9738409	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949003	chr12:11938229-12618690	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	esv1812889	chr12:12510842-12593406	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:12537200-12576000	Weak transcription	Primary B cells from cord blood	blood
2	chr12:12557200-12572400	Weak transcription	Primary T cells from cord blood	blood
3	chr12:12558000-12586000	Weak transcription	Pancreas	Pancrea
4	chr12:12562400-12576200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr12:12565200-12585000	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr12:12569000-12576800	Weak transcription	Primary T helper naive cells from peripheral blood	blood

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