The 2.0 version of rSNPBase

Variant report

Variant rs6488526
Chromosome Location chr12:12585996-12585997
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:86 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr12:12558000-12586000 Weak transcription Pancreas Pancrea
2 chr12:12572600-12588400 Weak transcription Primary T cells from cord blood blood
3 chr12:12578200-12588600 Weak transcription Primary B cells from cord blood blood
4 chr12:12578400-12586600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
5 chr12:12578400-12588200 Weak transcription Primary B cells from peripheral blood blood
6 chr12:12578800-12586200 Weak transcription Brain Hippocampus Middle brain
7 chr12:12578800-12589200 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
8 chr12:12579400-12587000 Weak transcription Psoas Muscle Psoas
9 chr12:12579600-12586600 Weak transcription Fetal Intestine Large intestine
10 chr12:12580000-12588600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
11 chr12:12580800-12587400 Enhancers Primary T helper memory cells from peripheral blood 2 blood
12 chr12:12581000-12586000 Weak transcription Esophagus oesophagus
13 chr12:12581200-12587000 Enhancers NHEK skin
14 chr12:12581600-12588800 Weak transcription Primary neutrophils fromperipheralblood blood
15 chr12:12582000-12589200 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
16 chr12:12582600-12586400 Weak transcription Skeletal Muscle Male skeletal muscle
17 chr12:12582600-12592000 Weak transcription Primary T killer naive cells fromperipheralblood blood
18 chr12:12582600-12595000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
19 chr12:12582600-12599400 Weak transcription HUES48 Cell Line embryonic stem cell
20 chr12:12582800-12586000 Weak transcription Fetal Thymus thymus
21 chr12:12582800-12592600 Weak transcription NH-A brain
22 chr12:12582800-12596400 Weak transcription Spleen Spleen
23 chr12:12583000-12586200 Weak transcription Thymus Thymus
24 chr12:12583000-12586600 Weak transcription Placenta Placenta
25 chr12:12583000-12588600 Weak transcription GM12878-XiMat blood
26 chr12:12583000-12589400 Weak transcription HSMM muscle
27 chr12:12583000-12594000 Weak transcription HSMMtube muscle
28 chr12:12583400-12587400 Enhancers NHLF lung
29 chr12:12583600-12586000 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
30 chr12:12583600-12588000 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
31 chr12:12583800-12586200 Enhancers Osteobl bone
32 chr12:12583800-12587400 Enhancers Fetal Stomach stomach
33 chr12:12584000-12587400 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
34 chr12:12584000-12588000 Enhancers Primary T helper 17 cells PMA-I stimulated --
35 chr12:12584000-12598600 Weak transcription Cortex derived primary cultured neurospheres brain
36 chr12:12584200-12586600 Weak transcription Fetal Adrenal Gland Adrenal Gland
37 chr12:12584200-12586800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
38 chr12:12584200-12588200 Weak transcription Pancreatic Islets Pancreatic Islet
39 chr12:12584200-12588600 Weak transcription Primary T helper cells PMA-I stimulated --
40 chr12:12584200-12588600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
41 chr12:12584200-12589200 Enhancers Fetal Lung lung
42 chr12:12584200-12590200 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
43 chr12:12584200-12592200 Weak transcription Primary T killer memory cells from peripheral blood blood
44 chr12:12584200-12592800 Weak transcription Primary T helper naive cells fromperipheralblood blood
45 chr12:12584200-12593200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
46 chr12:12584400-12586400 Weak transcription Primary T regulatory cells fromperipheralblood blood
47 chr12:12584400-12592000 Weak transcription Primary T helper naive cells from peripheral blood blood
48 chr12:12584600-12586400 Weak transcription Breast Myoepithelial Primary Cells Breast
49 chr12:12584800-12586000 Enhancers Muscle Satellite Cultured Cells --
50 chr12:12584800-12586000 Enhancers Liver Liver

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Last update: Aug 31, 2015