The 2.0 version of rSNPBase

Variant report

Variant rs2417187
Chromosome Location chr12:12561045-12561046
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:40 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr12:12535400-12561400 Weak transcription Primary B cells from peripheral blood blood
2 chr12:12537200-12576000 Weak transcription Primary B cells from cord blood blood
3 chr12:12538600-12561800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
4 chr12:12541400-12562800 Weak transcription Psoas Muscle Psoas
5 chr12:12552000-12561400 Weak transcription HSMMtube muscle
6 chr12:12552000-12569000 Weak transcription Hela-S3 cervix
7 chr12:12553200-12561400 Weak transcription HUES6 Cell Line embryonic stem cell
8 chr12:12556600-12561600 Weak transcription Monocytes-CD14+_RO01746 blood
9 chr12:12556800-12561800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
10 chr12:12557000-12561600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
11 chr12:12557200-12561200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
12 chr12:12557200-12572400 Weak transcription Primary T cells from cord blood blood
13 chr12:12557400-12561200 Weak transcription Primary T helper naive cells from peripheral blood blood
14 chr12:12557400-12561400 Weak transcription Primary T regulatory cells fromperipheralblood blood
15 chr12:12557600-12561200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
16 chr12:12557600-12561200 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
17 chr12:12557600-12561400 Weak transcription Primary T helper naive cells fromperipheralblood blood
18 chr12:12557800-12565000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
19 chr12:12558000-12586000 Weak transcription Pancreas Pancrea
20 chr12:12559000-12561200 Weak transcription GM12878-XiMat blood
21 chr12:12559000-12561400 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
22 chr12:12559200-12564800 Weak transcription Rectal Mucosa Donor 29 rectum
23 chr12:12559400-12561400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
24 chr12:12559400-12564800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
25 chr12:12560200-12561400 Weak transcription Brain Substantia Nigra brain
26 chr12:12560200-12562200 Weak transcription Fetal Intestine Small intestine
27 chr12:12560200-12564800 Weak transcription Rectal Mucosa Donor 31 rectum
28 chr12:12560200-12564800 Weak transcription HepG2 liver
29 chr12:12560600-12561200 Enhancers Primary Natural Killer cells fromperipheralblood blood
30 chr12:12560800-12561400 Weak transcription Breast Myoepithelial Primary Cells Breast
31 chr12:12560800-12561600 Enhancers Brain Hippocampus Middle brain
32 chr12:12561000-12561400 Enhancers Primary T helper 17 cells PMA-I stimulated --
33 chr12:12561000-12561800 Enhancers Primary hematopoietic stem cells short term culture blood
34 chr12:12561000-12561800 Weak transcription Dnd41 blood
35 chr12:12561000-12562000 Enhancers Primary T helper cells PMA-I stimulated --
36 chr12:12561000-12562000 Enhancers Primary T helper cells fromperipheralblood blood
37 chr12:12561000-12562000 Enhancers Primary T killer naive cells fromperipheralblood blood
38 chr12:12561000-12562000 Enhancers Primary T killer memory cells from peripheral blood blood
39 chr12:12561000-12562000 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
40 chr12:12561000-12562200 Enhancers Primary neutrophils fromperipheralblood blood

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Last update: Aug 31, 2015