Variant report

Variant	rs16912381
Chromosome Location	chr9:110083336-110083337
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:110081713..110085452-chr9:110093705..110096691,3	MCF-7	breast:
2	chr9:110079143..110082107-chr9:110082961..110085070,2	MCF-7	breast:
3	chr9:110070129..110072488-chr9:110081712..110083415,2	K562	blood:
4	chr9:110044896..110047317-chr9:110081780..110084455,3	MCF-7	breast:
5	chr9:110044603..110047808-chr9:110081629..110084140,3	K562	blood:
6	chr9:110043401..110047935-chr9:110082393..110087962,7	K562	blood:
7	chr9:110070283..110073210-chr9:110082560..110084216,2	MCF-7	breast:
8	chr9:110082760..110084728-chr9:110089883..110091772,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000119318	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11573621	0.90[YRI][hapmap];1.00[AMR][1000 genomes]
rs11573630	0.90[YRI][hapmap];1.00[AMR][1000 genomes]
rs11573633	1.00[AMR][1000 genomes]
rs11573647	0.89[YRI][hapmap];1.00[AMR][1000 genomes]
rs11573653	1.00[TSI][hapmap];1.00[AMR][1000 genomes]
rs11573666	1.00[AMR][1000 genomes]
rs11573667	1.00[AMR][1000 genomes]
rs11573672	1.00[AMR][1000 genomes]
rs11573689	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11573695	0.97[AFR][1000 genomes]
rs11573713	0.89[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11573715	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11573723	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16912336	1.00[TSI][hapmap]
rs16912377	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16912387	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs1805260	1.00[TSI][hapmap]
rs1805330	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];0.95[YRI][hapmap];1.00[AFR][1000 genomes]
rs1805332	0.82[LWK][hapmap]
rs1805333	1.00[AMR][1000 genomes]
rs57935630	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58248414	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58278531	1.00[AFR][1000 genomes]
rs59489709	1.00[AMR][1000 genomes]
rs60718910	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61015686	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7024037	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7036593	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7040616	0.90[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73515722	1.00[AMR][1000 genomes]
rs73515727	1.00[AMR][1000 genomes]
rs73515802	1.00[AMR][1000 genomes]
rs73517767	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73517773	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73517777	1.00[EUR][1000 genomes]
rs73517779	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73517781	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73656335	1.00[EUR][1000 genomes]
rs73668775	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7847357	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7847961	1.00[AMR][1000 genomes]
rs7848294	1.00[TSI][hapmap]
rs7855013	0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs817837	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869351	chr9:109593212-110191170	Active TSS Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv530948	chr9:109760752-110413602	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv519266	chr9:110049477-110085255	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs16912381	FHL2	trans	lymphoblastoid	seeQTL

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110058600-110098600	Weak transcription	Small Intestine	intestine
2	chr9:110061400-110094600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr9:110064000-110085000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr9:110065200-110089200	Strong transcription	Fetal Thymus	thymus
5	chr9:110065600-110098600	Strong transcription	Dnd41	blood
6	chr9:110070200-110104400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr9:110070400-110085000	Weak transcription	Colonic Mucosa	Colon
8	chr9:110070400-110099400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr9:110071400-110084000	Weak transcription	Brain Hippocampus Middle	brain
10	chr9:110071400-110103000	Weak transcription	Stomach Mucosa	stomach
11	chr9:110071800-110084400	Weak transcription	Colon Smooth Muscle	Colon
12	chr9:110074200-110088200	Strong transcription	Fetal Intestine Large	intestine
13	chr9:110075000-110084800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr9:110075000-110088000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr9:110075200-110084800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr9:110075200-110084800	Weak transcription	Spleen	Spleen
17	chr9:110075200-110090600	Weak transcription	Right Ventricle	heart
18	chr9:110075200-110093400	Weak transcription	Esophagus	oesophagus
19	chr9:110076000-110089400	Strong transcription	Primary hematopoietic stem cells	blood
20	chr9:110076200-110084600	Weak transcription	Brain Cingulate Gyrus	brain
21	chr9:110076200-110087800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
22	chr9:110076400-110084000	Weak transcription	Hela-S3	cervix
23	chr9:110076400-110084600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr9:110076800-110084200	Weak transcription	Rectal Smooth Muscle	rectum
25	chr9:110076800-110084600	Weak transcription	Brain Substantia Nigra	brain
26	chr9:110076800-110088200	Weak transcription	Fetal Brain Male	brain
27	chr9:110077000-110084400	Weak transcription	Fetal Brain Female	brain
28	chr9:110077200-110086200	Weak transcription	Stomach Smooth Muscle	stomach
29	chr9:110077200-110090600	Weak transcription	Brain Germinal Matrix	brain
30	chr9:110077400-110084000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr9:110077400-110084200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr9:110077600-110093800	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr9:110078800-110084200	Weak transcription	Fetal Stomach	stomach
34	chr9:110078800-110084400	Strong transcription	HUES64 Cell Line	embryonic stem cell
35	chr9:110078800-110084600	Strong transcription	Liver	Liver
36	chr9:110078800-110087000	Weak transcription	Fetal Intestine Small	intestine
37	chr9:110079000-110089800	Strong transcription	NH-A	brain
38	chr9:110079200-110085400	Strong transcription	Fetal Muscle Trunk	muscle
39	chr9:110079200-110087800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr9:110079200-110088200	Strong transcription	K562	blood
41	chr9:110079400-110084600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr9:110079400-110084800	Weak transcription	Left Ventricle	heart
43	chr9:110079400-110088000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr9:110079400-110088600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr9:110079400-110097400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr9:110079600-110084800	Weak transcription	Ovary	ovary
47	chr9:110079600-110085000	Weak transcription	Fetal Heart	heart
48	chr9:110079600-110085600	Strong transcription	Monocytes-CD14+_RO01746	blood
49	chr9:110079600-110085800	Strong transcription	Primary monocytes fromperipheralblood	blood
50	chr9:110079600-110087000	Weak transcription	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links