Variant report

Variant	rs7855013
Chromosome Location	chr9:110048143-110048144
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:110044300..110048942-chr9:110067094..110074281,11	MCF-7	breast:
2	chr9:110045113..110046713-chr9:110046851..110048527,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000119318	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs11573621	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11573630	0.95[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11573633	1.00[AMR][1000 genomes]
rs11573634	1.00[EUR][1000 genomes]
rs11573647	0.94[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11573650	1.00[EUR][1000 genomes]
rs11573653	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11573666	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11573667	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11573672	1.00[AMR][1000 genomes]
rs11573713	1.00[AMR][1000 genomes]
rs11573715	0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs11573723	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16912336	1.00[EUR][1000 genomes]
rs16912377	0.85[YRI][hapmap]
rs16912381	0.83[YRI][hapmap];1.00[AMR][1000 genomes]
rs16912387	0.83[YRI][hapmap]
rs1805260	1.00[EUR][1000 genomes]
rs1805333	1.00[AMR][1000 genomes]
rs57474128	1.00[EUR][1000 genomes]
rs57935630	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58248414	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58465981	1.00[EUR][1000 genomes]
rs59489709	1.00[AMR][1000 genomes]
rs59581003	1.00[EUR][1000 genomes]
rs60306961	1.00[EUR][1000 genomes]
rs60718910	1.00[AMR][1000 genomes]
rs61015686	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7024037	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7036593	1.00[AMR][1000 genomes]
rs7040616	0.95[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73509835	1.00[EUR][1000 genomes]
rs73509843	1.00[EUR][1000 genomes]
rs73509845	1.00[EUR][1000 genomes]
rs73513774	1.00[EUR][1000 genomes]
rs73513780	1.00[EUR][1000 genomes]
rs73513785	1.00[EUR][1000 genomes]
rs73513790	1.00[EUR][1000 genomes]
rs73515722	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73515727	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73515802	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73517767	1.00[AMR][1000 genomes]
rs73517773	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73517779	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73517781	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73668770	1.00[EUR][1000 genomes]
rs73668775	1.00[AMR][1000 genomes]
rs7847357	0.85[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7847961	1.00[AMR][1000 genomes]
rs7861622	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869351	chr9:109593212-110191170	Active TSS Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv530948	chr9:109760752-110413602	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv831682	chr9:109937181-110075453	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv893698	chr9:109998563-110052660	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv508560	chr9:110006490-110060539	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110044200-110048200	Active TSS	H1 Cell Line	embryonic stem cell
2	chr9:110044400-110048200	Active TSS	HUES48 Cell Line	embryonic stem cell
3	chr9:110044400-110048200	Active TSS	Duodenum Smooth Muscle	Duodenum
4	chr9:110044400-110048400	Active TSS	Fetal Kidney	kidney
5	chr9:110044400-110048800	Active TSS	Pancreatic Islets	Pancreatic Islet
6	chr9:110044600-110048200	Active TSS	ES-I3 Cell Line	embryonic stem cell
7	chr9:110044600-110048200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr9:110044600-110048200	Active TSS	A549	lung
9	chr9:110044600-110048400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr9:110044600-110048400	Active TSS	GM12878-XiMat	blood
11	chr9:110044600-110049000	Active TSS	Right Ventricle	heart
12	chr9:110044800-110048200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr9:110044800-110048200	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr9:110044800-110048200	Active TSS	Brain Inferior Temporal Lobe	brain
15	chr9:110044800-110048200	Active TSS	Fetal Brain Female	brain
16	chr9:110044800-110048200	Active TSS	Fetal Lung	lung
17	chr9:110044800-110048400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr9:110044800-110048400	Active TSS	HUES6 Cell Line	embryonic stem cell
19	chr9:110044800-110048400	Active TSS	iPS-15b Cell Line	embryonic stem cell
20	chr9:110044800-110048400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr9:110044800-110048400	Active TSS	Left Ventricle	heart
22	chr9:110044800-110048400	Active TSS	K562	blood
23	chr9:110044800-110048600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
24	chr9:110044800-110048600	Active TSS	Ovary	ovary
25	chr9:110044800-110048800	Active TSS	Psoas Muscle	Psoas
26	chr9:110044800-110048800	Active TSS	HSMMtube	muscle
27	chr9:110045000-110048200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr9:110045000-110048200	Active TSS	Fetal Intestine Large	intestine
29	chr9:110045000-110048200	Active TSS	Placenta Amnion	Placenta Amnion
30	chr9:110045000-110048200	Active TSS	NH-A	brain
31	chr9:110045000-110048400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr9:110045000-110048400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr9:110045000-110048400	Active TSS	Fetal Muscle Leg	muscle
34	chr9:110045000-110048400	Active TSS	Placenta	Placenta
35	chr9:110045000-110048400	Active TSS	Fetal Stomach	stomach
36	chr9:110045000-110048400	Active TSS	HMEC	breast
37	chr9:110045000-110048400	Active TSS	NHDF-Ad	bronchial
38	chr9:110045000-110048600	Active TSS	Breast Myoepithelial Primary Cells	Breast
39	chr9:110045000-110048600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr9:110045000-110048600	Active TSS	HSMM	muscle
41	chr9:110045000-110050600	Active TSS	NHLF	lung
42	chr9:110045200-110048400	Active TSS	Skeletal Muscle Female	skeletal muscle
43	chr9:110046200-110048600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
44	chr9:110046400-110048200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr9:110046400-110048200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr9:110046400-110048400	Active TSS	Right Atrium	heart
47	chr9:110046400-110048800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr9:110046600-110049000	Flanking Active TSS	Adipose Nuclei	Adipose
49	chr9:110046800-110049000	Flanking Active TSS	Primary T cells from cord blood	blood
50	chr9:110046800-110049000	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood

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