Variant report

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:110000595..110013733-chr9:110042800..110048700,27	MCF-7	breast:
2	chr9:110001230..110003494-chr9:110052662..110055320,2	MCF-7	breast:
3	chr9:110001502..110002534-chr9:110103139..110104123,8	MCF-7	breast:
4	chr9:110001517..110002205-chr9:110061655..110062417,2	MCF-7	breast:
5	chr9:109997045..109999849-chr9:110000685..110002475,2	K562	blood:
6	chr9:110000462..110002471-chr9:110023885..110026019,2	MCF-7	breast:
7	chr9:109994966..109998554-chr9:110000062..110002388,3	MCF-7	breast:
8	chr9:110001311..110002427-chr9:110103159..110104135,5	MCF-7	breast:
9	chr9:109996343..109999220-chr9:109999435..110002268,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000119318	Chromatin interaction

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11573621	1.00[EUR][1000 genomes]
rs11573630	1.00[EUR][1000 genomes]
rs11573634	1.00[EUR][1000 genomes]
rs11573647	1.00[EUR][1000 genomes]
rs11573650	1.00[EUR][1000 genomes]
rs11573653	1.00[EUR][1000 genomes]
rs11573666	1.00[EUR][1000 genomes]
rs11573667	1.00[EUR][1000 genomes]
rs16912336	1.00[EUR][1000 genomes]
rs1805260	1.00[EUR][1000 genomes]
rs57392585	1.00[EUR][1000 genomes]
rs57474128	1.00[EUR][1000 genomes]
rs58248414	1.00[EUR][1000 genomes]
rs58465981	1.00[EUR][1000 genomes]
rs59581003	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60306961	1.00[EUR][1000 genomes]
rs60677048	1.00[EUR][1000 genomes]
rs61015686	1.00[EUR][1000 genomes]
rs7020515	1.00[EUR][1000 genomes]
rs7024037	1.00[EUR][1000 genomes]
rs73508290	1.00[EUR][1000 genomes]
rs73509835	1.00[EUR][1000 genomes]
rs73509843	1.00[EUR][1000 genomes]
rs73509845	1.00[EUR][1000 genomes]
rs73513774	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73513780	1.00[EUR][1000 genomes]
rs73513785	1.00[EUR][1000 genomes]
rs73513790	1.00[EUR][1000 genomes]
rs73515722	1.00[EUR][1000 genomes]
rs73515802	1.00[EUR][1000 genomes]
rs73668770	1.00[EUR][1000 genomes]
rs7847357	1.00[EUR][1000 genomes]
rs7855013	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869351	chr9:109593212-110191170	Active TSS Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv530948	chr9:109760752-110413602	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv831682	chr9:109937181-110075453	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv893698	chr9:109998563-110052660	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:109998600-110006800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr9:109999200-110008600	Weak transcription	Liver	Liver
3	chr9:110000600-110002000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr9:110000600-110003200	Weak transcription	NHDF-Ad	bronchial
5	chr9:110000600-110003400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr9:110000800-110002200	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr9:110000800-110003600	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr9:110001200-110002000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr9:110001400-110002200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr9:110001400-110002400	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr9:110001400-110002400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr9:110001600-110002400	Enhancers	HepG2	liver
13	chr9:110001800-110002000	Enhancers	H1 Cell Line	embryonic stem cell
14	chr9:110001800-110002000	Enhancers	H9 Cell Line	embryonic stem cell
15	chr9:110001800-110002200	Enhancers	Fetal Kidney	kidney
16	chr9:110001800-110002400	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr9:110001800-110002400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr9:110001800-110002400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr9:110001800-110006000	Enhancers	ES-I3 Cell Line	embryonic stem cell

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