Variant report

Variant	rs60677048
Chromosome Location	chr9:109848502-109848503
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12351612	1.00[EUR][1000 genomes]
rs16912336	1.00[EUR][1000 genomes]
rs57392585	1.00[EUR][1000 genomes]
rs58465981	1.00[EUR][1000 genomes]
rs59581003	1.00[EUR][1000 genomes]
rs60306961	1.00[EUR][1000 genomes]
rs7020515	1.00[EUR][1000 genomes]
rs73508290	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73509835	1.00[EUR][1000 genomes]
rs73509843	1.00[EUR][1000 genomes]
rs73509845	1.00[EUR][1000 genomes]
rs73513774	1.00[EUR][1000 genomes]
rs73513780	1.00[EUR][1000 genomes]
rs73513785	1.00[EUR][1000 genomes]
rs73513790	1.00[EUR][1000 genomes]
rs7861622	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869351	chr9:109593212-110191170	Active TSS Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv831680	chr9:109653596-109848827	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv530948	chr9:109760752-110413602	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:109847000-109849600	Enhancers	Skeletal Muscle Female	skeletal muscle
2	chr9:109848000-109849400	Enhancers	Psoas Muscle	Psoas
3	chr9:109848400-109849600	Enhancers	Skeletal Muscle Male	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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