Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:109994966..109998554-chr9:110000062..110002388,3	MCF-7	breast:
2	chr9:109996343..109999220-chr9:109999435..110002268,3	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11573621	1.00[EUR][1000 genomes]
rs11573630	1.00[EUR][1000 genomes]
rs11573634	1.00[EUR][1000 genomes]
rs11573647	1.00[EUR][1000 genomes]
rs11573650	1.00[EUR][1000 genomes]
rs11573653	1.00[EUR][1000 genomes]
rs11573666	1.00[EUR][1000 genomes]
rs11573667	1.00[EUR][1000 genomes]
rs16912336	1.00[EUR][1000 genomes]
rs1805260	1.00[EUR][1000 genomes]
rs57392585	1.00[EUR][1000 genomes]
rs57474128	1.00[EUR][1000 genomes]
rs58248414	1.00[EUR][1000 genomes]
rs58465981	1.00[EUR][1000 genomes]
rs59581003	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60306961	1.00[EUR][1000 genomes]
rs60677048	1.00[EUR][1000 genomes]
rs61015686	1.00[EUR][1000 genomes]
rs7020515	1.00[EUR][1000 genomes]
rs7024037	1.00[EUR][1000 genomes]
rs73508290	1.00[EUR][1000 genomes]
rs73509835	1.00[EUR][1000 genomes]
rs73509843	1.00[EUR][1000 genomes]
rs73509845	1.00[EUR][1000 genomes]
rs73513780	1.00[EUR][1000 genomes]
rs73513785	1.00[EUR][1000 genomes]
rs73513790	1.00[EUR][1000 genomes]
rs73515722	1.00[EUR][1000 genomes]
rs73515802	1.00[EUR][1000 genomes]
rs73668770	1.00[EUR][1000 genomes]
rs7847357	1.00[EUR][1000 genomes]
rs7855013	1.00[EUR][1000 genomes]
rs7861622	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869351	chr9:109593212-110191170	Active TSS Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv530948	chr9:109760752-110413602	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv831682	chr9:109937181-110075453	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:109990600-109997400	Weak transcription	Liver	Liver

Quick Search: