Variant report

Variant	rs73513780
Chromosome Location	chr9:110016820-110016821
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:110015966..110018595-chr9:110020108..110022273,3	MCF-7	breast:
2	chr9:110014211..110018622-chr9:110040932..110043716,4	MCF-7	breast:
3	chr9:110011669..110017049-chr9:110043880..110047775,8	MCF-7	breast:

Variant related genes	Relation type
ENSG00000119318	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11573621	1.00[EUR][1000 genomes]
rs11573630	1.00[EUR][1000 genomes]
rs11573634	1.00[EUR][1000 genomes]
rs11573647	1.00[EUR][1000 genomes]
rs11573650	1.00[EUR][1000 genomes]
rs11573653	1.00[EUR][1000 genomes]
rs11573666	1.00[EUR][1000 genomes]
rs11573667	1.00[EUR][1000 genomes]
rs16912336	1.00[EUR][1000 genomes]
rs1805260	1.00[EUR][1000 genomes]
rs57392585	1.00[EUR][1000 genomes]
rs57474128	1.00[EUR][1000 genomes]
rs58248414	1.00[EUR][1000 genomes]
rs58465981	1.00[EUR][1000 genomes]
rs59581003	1.00[EUR][1000 genomes]
rs60306961	1.00[EUR][1000 genomes]
rs60677048	1.00[EUR][1000 genomes]
rs61015686	1.00[EUR][1000 genomes]
rs7020515	1.00[EUR][1000 genomes]
rs7024037	1.00[EUR][1000 genomes]
rs73508290	1.00[EUR][1000 genomes]
rs73509835	1.00[EUR][1000 genomes]
rs73509843	1.00[EUR][1000 genomes]
rs73509845	1.00[EUR][1000 genomes]
rs73513774	1.00[EUR][1000 genomes]
rs73513785	1.00[EUR][1000 genomes]
rs73513790	1.00[EUR][1000 genomes]
rs73515722	1.00[EUR][1000 genomes]
rs73515802	1.00[EUR][1000 genomes]
rs73668770	1.00[EUR][1000 genomes]
rs7847357	1.00[EUR][1000 genomes]
rs7855013	1.00[EUR][1000 genomes]
rs7861622	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869351	chr9:109593212-110191170	Active TSS Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv530948	chr9:109760752-110413602	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv831682	chr9:109937181-110075453	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv893698	chr9:109998563-110052660	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv508560	chr9:110006490-110060539	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110007000-110022600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr9:110012400-110022600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr9:110014600-110017000	Enhancers	Fetal Heart	heart
4	chr9:110014800-110017600	Weak transcription	Pancreas	Pancrea
5	chr9:110014800-110021400	Weak transcription	Adipose Nuclei	Adipose
6	chr9:110014800-110022800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr9:110015400-110017200	Active TSS	HSMMtube	muscle
8	chr9:110015400-110022600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr9:110016000-110017200	Weak transcription	NHDF-Ad	bronchial
10	chr9:110016400-110017000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr9:110016400-110017000	Active TSS	Skeletal Muscle Female	skeletal muscle
12	chr9:110016400-110017600	Weak transcription	HepG2	liver
13	chr9:110016600-110017000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr9:110016800-110017000	Enhancers	Placenta Amnion	Placenta Amnion

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