Variant report

Variant	rs7847357
Chromosome Location	chr9:110074372-110074373
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:110068615..110071443-chr9:110072846..110075913,3	MCF-7	breast:
2	chr9:110044399..110049612-chr9:110071012..110080286,12	K562	blood:
3	chr9:110069222..110072456-chr9:110073619..110076462,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000119318	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs11573621	0.91[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11573630	0.91[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11573633	1.00[AMR][1000 genomes]
rs11573634	1.00[EUR][1000 genomes]
rs11573647	0.90[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11573650	1.00[EUR][1000 genomes]
rs11573653	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11573666	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11573667	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11573672	1.00[AMR][1000 genomes]
rs11573689	0.89[AFR][1000 genomes]
rs11573695	0.93[AFR][1000 genomes]
rs11573713	0.85[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11573715	1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11573723	1.00[AMR][1000 genomes]
rs16912336	1.00[EUR][1000 genomes]
rs16912377	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs16912381	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16912387	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs1805260	1.00[EUR][1000 genomes]
rs1805330	0.95[YRI][hapmap];0.96[AFR][1000 genomes]
rs1805333	1.00[AMR][1000 genomes]
rs57474128	1.00[EUR][1000 genomes]
rs57935630	1.00[AMR][1000 genomes]
rs58248414	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58278531	0.96[AFR][1000 genomes]
rs58465981	1.00[EUR][1000 genomes]
rs59489709	1.00[AMR][1000 genomes]
rs59581003	1.00[EUR][1000 genomes]
rs60306961	1.00[EUR][1000 genomes]
rs60718910	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61015686	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7024037	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7036593	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7040616	0.91[YRI][hapmap];1.00[AMR][1000 genomes]
rs73513774	1.00[EUR][1000 genomes]
rs73513780	1.00[EUR][1000 genomes]
rs73513785	1.00[EUR][1000 genomes]
rs73513790	1.00[EUR][1000 genomes]
rs73515722	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73515727	1.00[AMR][1000 genomes]
rs73515802	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73517767	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73517773	1.00[AMR][1000 genomes]
rs73517779	1.00[AMR][1000 genomes]
rs73517781	1.00[AMR][1000 genomes]
rs73668770	1.00[EUR][1000 genomes]
rs73668775	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7847961	1.00[AMR][1000 genomes]
rs7855013	0.85[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7861622	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869351	chr9:109593212-110191170	Active TSS Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv530948	chr9:109760752-110413602	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
3	nsv831682	chr9:109937181-110075453	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv519266	chr9:110049477-110085255	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:110051600-110079200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr9:110057200-110079200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr9:110057400-110074600	Weak transcription	Spleen	Spleen
4	chr9:110057400-110074800	Weak transcription	Psoas Muscle	Psoas
5	chr9:110058600-110074800	Weak transcription	Right Atrium	heart
6	chr9:110058600-110098600	Weak transcription	Small Intestine	intestine
7	chr9:110061400-110094600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr9:110062000-110076000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr9:110062000-110078000	Strong transcription	HUES64 Cell Line	embryonic stem cell
10	chr9:110062400-110077800	Strong transcription	HUES48 Cell Line	embryonic stem cell
11	chr9:110062400-110078600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
12	chr9:110062600-110078800	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr9:110062800-110077600	Strong transcription	HUES6 Cell Line	embryonic stem cell
14	chr9:110063000-110077200	Strong transcription	A549	lung
15	chr9:110063000-110078200	Strong transcription	Primary monocytes fromperipheralblood	blood
16	chr9:110063000-110079200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr9:110063200-110077400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
18	chr9:110063200-110077400	Strong transcription	Primary B cells from peripheral blood	blood
19	chr9:110063200-110077800	Strong transcription	Placenta	Placenta
20	chr9:110063400-110077800	Strong transcription	Fetal Lung	lung
21	chr9:110063600-110078600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr9:110063800-110079200	Strong transcription	Osteobl	bone
23	chr9:110063800-110079400	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr9:110064000-110074400	Strong transcription	HSMM	muscle
25	chr9:110064000-110074600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr9:110064000-110074600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr9:110064000-110085000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr9:110065200-110089200	Strong transcription	Fetal Thymus	thymus
29	chr9:110065400-110077800	Strong transcription	Primary B cells from cord blood	blood
30	chr9:110065600-110098600	Strong transcription	Dnd41	blood
31	chr9:110067000-110077800	Strong transcription	Rectal Mucosa Donor 31	rectum
32	chr9:110067400-110076600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr9:110068400-110077200	Strong transcription	Duodenum Mucosa	Duodenum
34	chr9:110068600-110074400	Strong transcription	Adipose Nuclei	Adipose
35	chr9:110068600-110077400	Strong transcription	HUVEC	blood vessel
36	chr9:110069000-110074400	Weak transcription	Pancreas	Pancrea
37	chr9:110069000-110074600	Weak transcription	Gastric	stomach
38	chr9:110069000-110074800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr9:110069800-110074600	Weak transcription	Aorta	Aorta
40	chr9:110069800-110074600	Weak transcription	Fetal Stomach	stomach
41	chr9:110070000-110074600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr9:110070200-110074400	Weak transcription	Brain Germinal Matrix	brain
43	chr9:110070200-110104400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
44	chr9:110070400-110074400	Weak transcription	Rectal Smooth Muscle	rectum
45	chr9:110070400-110074400	Weak transcription	NHEK	skin
46	chr9:110070400-110085000	Weak transcription	Colonic Mucosa	Colon
47	chr9:110070400-110099400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr9:110070600-110074600	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr9:110070600-110079400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
50	chr9:110071000-110074400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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