Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:109885696..109887930-chr9:109888786..109890955,2	MCF-7	breast:
2	chr9:109884394..109886026-chr9:109931594..109934408,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000226535	Chromatin interaction

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10978680	1.00[TSI][hapmap]
rs10978681	1.00[TSI][hapmap]
rs11573653	1.00[TSI][hapmap]
rs12684556	1.00[CEU][hapmap]
rs12686587	1.00[CEU][hapmap]
rs16912336	1.00[TSI][hapmap]
rs16912381	1.00[TSI][hapmap]
rs16912387	1.00[TSI][hapmap]
rs16925955	1.00[CEU][hapmap]
rs16926052	1.00[CEU][hapmap]
rs1805260	1.00[TSI][hapmap]
rs56190065	0.89[AMR][1000 genomes]
rs6477557	0.89[AMR][1000 genomes]
rs7027452	0.89[AMR][1000 genomes]
rs7031901	1.00[CEU][hapmap]
rs7039109	1.00[CEU][hapmap]
rs7043419	1.00[CEU][hapmap]
rs73668745	0.89[AMR][1000 genomes]
rs73668748	1.00[EUR][1000 genomes]
rs73668753	0.89[AMR][1000 genomes]
rs73668754	0.89[AMR][1000 genomes]
rs7851411	1.00[CEU][hapmap]
rs7855383	0.89[AMR][1000 genomes]
rs7865611	1.00[CEU][hapmap]
rs7868949	1.00[TSI][hapmap]
rs7874076	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7875051	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869351	chr9:109593212-110191170	Active TSS Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv530948	chr9:109760752-110413602	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:109885200-109886400	Enhancers	Skeletal Muscle Female	skeletal muscle
2	chr9:109885600-109886600	Enhancers	Skeletal Muscle Male	skeletal muscle
3	chr9:109885800-109886000	Bivalent Enhancer	HSMM	muscle

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