Variant report

Variant	rs73668748
Chromosome Location	chr9:109873409-109873410
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs56190065	0.89[AMR][1000 genomes]
rs6477557	0.89[AMR][1000 genomes]
rs7027452	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs73668745	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs73668749	0.86[AFR][1000 genomes]
rs73668753	0.89[AMR][1000 genomes]
rs73668754	0.89[AMR][1000 genomes]
rs7848294	1.00[EUR][1000 genomes]
rs7855383	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs7874076	1.00[EUR][1000 genomes]
rs7875051	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869351	chr9:109593212-110191170	Active TSS Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv530948	chr9:109760752-110413602	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:109870600-109880200	Weak transcription	Fetal Brain Male	brain
2	chr9:109871600-109876400	Weak transcription	Skeletal Muscle Male	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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