Variant report

No.	Distal block	Cell Line	Cell type
1	chr9:109889063..109891473-chr9:109891672..109893554,2	MCF-7	breast:
2	chr9:109877209..109879112-chr9:109891286..109893928,2	K562	blood:
3	chr9:109888668..109890208-chr9:109891618..109894122,2	K562	blood:
4	chr9:109877454..109879112-chr9:109891286..109893641,2	K562	blood:

Variant related genes	Relation type
ENSG00000223615	Chromatin interaction
ENSG00000225531	Chromatin interaction

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12006494	1.00[EUR][1000 genomes]
rs4541992	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs56190065	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57132471	1.00[EUR][1000 genomes]
rs60075571	0.87[AMR][1000 genomes]
rs60603378	0.87[AMR][1000 genomes]
rs6477557	1.00[AMR][1000 genomes]
rs7027452	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7043490	1.00[EUR][1000 genomes]
rs73668745	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73668748	0.89[AMR][1000 genomes]
rs73668749	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73668750	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73668754	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73668757	0.87[AMR][1000 genomes]
rs73668758	0.87[AMR][1000 genomes]
rs7848294	0.89[AMR][1000 genomes]
rs7855383	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7874076	0.89[AMR][1000 genomes]
rs7875051	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869351	chr9:109593212-110191170	Active TSS Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv530948	chr9:109760752-110413602	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:109889800-109893000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr9:109892200-109892600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
3	chr9:109892200-109894200	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr9:109892400-109893600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr9:109892400-109893800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr9:109892400-109894200	Enhancers	iPS-15b Cell Line	embryonic stem cell

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