Variant report
| Variant | rs56190065 |
|---|---|
| Chromosome Location | chr9:109859822-109859823 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000226047 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs12006494 | 0.95[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs4541992 | 0.87[AMR][1000 genomes] |
| rs57132471 | 0.97[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs60075571 | 0.87[AMR][1000 genomes] |
| rs60603378 | 0.87[AMR][1000 genomes] |
| rs6477557 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7027452 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7043490 | 0.94[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73668745 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73668748 | 0.89[AMR][1000 genomes] |
| rs73668749 | 0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73668750 | 1.00[EUR][1000 genomes] |
| rs73668753 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73668754 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73668757 | 0.87[AMR][1000 genomes] |
| rs73668758 | 0.87[AMR][1000 genomes] |
| rs7848294 | 0.89[AMR][1000 genomes] |
| rs7855383 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7874076 | 0.89[AMR][1000 genomes] |
| rs7875051 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv869351 | chr9:109593212-110191170 | Active TSS Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 34 gene(s) | inside rSNPs | diseases |
| 2 | nsv530948 | chr9:109760752-110413602 | Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 57 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
