Variant report
| Variant | rs7874076 |
|---|---|
| Chromosome Location | chr9:109885394-109885395 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr9:109884394..109886026-chr9:109931594..109934408,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000226535 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs12684556 | 1.00[CEU][hapmap] |
| rs12686587 | 1.00[CEU][hapmap] |
| rs16925955 | 1.00[CEU][hapmap] |
| rs16926052 | 1.00[CEU][hapmap] |
| rs56190065 | 0.89[AMR][1000 genomes] |
| rs6477557 | 0.89[AMR][1000 genomes] |
| rs7027452 | 0.89[AMR][1000 genomes] |
| rs7031901 | 1.00[CEU][hapmap] |
| rs7039109 | 1.00[CEU][hapmap] |
| rs7043419 | 1.00[CEU][hapmap] |
| rs73668745 | 0.89[AMR][1000 genomes] |
| rs73668748 | 1.00[EUR][1000 genomes] |
| rs73668753 | 0.89[AMR][1000 genomes] |
| rs73668754 | 0.89[AMR][1000 genomes] |
| rs7848294 | 1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7851411 | 1.00[CEU][hapmap] |
| rs7855383 | 0.89[AMR][1000 genomes] |
| rs7865611 | 1.00[CEU][hapmap] |
| rs7875051 | 0.89[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv869351 | chr9:109593212-110191170 | Active TSS Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 34 gene(s) | inside rSNPs | diseases |
| 2 | nsv530948 | chr9:109760752-110413602 | Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 57 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:109885200-109886400 | Enhancers | Skeletal Muscle Female | skeletal muscle |
