Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:109861289..109864233-chr9:109875125..109876718,2	MCF-7	breast:
2	chr9:109858559..109860624-chr9:109862289..109864041,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs12006494	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4541992	0.87[AMR][1000 genomes]
rs56190065	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57132471	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60075571	0.87[AMR][1000 genomes]
rs60603378	0.87[AMR][1000 genomes]
rs6477557	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7027452	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7043490	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73668748	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs73668749	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73668750	1.00[EUR][1000 genomes]
rs73668753	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73668754	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73668757	0.87[AMR][1000 genomes]
rs73668758	0.87[AMR][1000 genomes]
rs7848294	0.89[AMR][1000 genomes]
rs7855383	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7874076	0.89[AMR][1000 genomes]
rs7875051	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869351	chr9:109593212-110191170	Active TSS Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv530948	chr9:109760752-110413602	Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	57 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:109860000-109863000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr9:109862000-109863200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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