Variant report

Variant	rs16918146
Chromosome Location	chr9:101803595-101803596
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:101801421..101804201-chr9:101810789..101812954,3	K562	blood:
2	chr9:101803071..101805545-chr9:101877080..101878888,2	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10512262	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12001981	0.81[ASN][1000 genomes]
rs12352174	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13291453	0.81[ASN][1000 genomes]
rs13296166	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13302368	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1537505	0.81[ASN][1000 genomes]
rs1537506	0.81[ASN][1000 genomes]
rs16918148	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16918154	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2067986	0.81[ASN][1000 genomes]
rs34154744	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34382379	0.81[ASN][1000 genomes]
rs34654420	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34749011	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35413276	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4563947	0.81[ASN][1000 genomes]
rs4631520	0.81[ASN][1000 genomes]
rs6478969	0.81[ASN][1000 genomes]
rs7019613	0.81[ASN][1000 genomes]
rs7036916	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs71501887	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7851079	0.93[EUR][1000 genomes]
rs7854112	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs928522	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv466442	chr9:101788522-101816399	ZNF genes & repeats Enhancers Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv614954	chr9:101788522-101816399	Strong transcription Genic enhancers Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv893618	chr9:101800106-101886071	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101761600-101814400	Weak transcription	Gastric	stomach
2	chr9:101782000-101819800	Weak transcription	Colonic Mucosa	Colon
3	chr9:101787200-101806400	Weak transcription	Ovary	ovary
4	chr9:101789000-101812000	Weak transcription	Esophagus	oesophagus
5	chr9:101789200-101805400	Weak transcription	Right Ventricle	heart
6	chr9:101793800-101837600	Weak transcription	Psoas Muscle	Psoas
7	chr9:101796200-101806400	Strong transcription	Stomach Smooth Muscle	stomach
8	chr9:101798200-101811400	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr9:101798400-101819800	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr9:101799000-101804600	Enhancers	HSMM	muscle
11	chr9:101799200-101814600	Weak transcription	Pancreas	Pancrea
12	chr9:101799400-101804000	Genic enhancers	Fetal Muscle Leg	muscle
13	chr9:101799400-101804200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr9:101799400-101805200	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr9:101800000-101804200	Enhancers	Osteobl	bone
16	chr9:101800200-101804200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr9:101800200-101806800	Weak transcription	Rectal Smooth Muscle	rectum
18	chr9:101800600-101804400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr9:101801200-101803800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr9:101801200-101804400	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr9:101801400-101804200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr9:101801400-101804200	Enhancers	Muscle Satellite Cultured Cells	--
23	chr9:101801400-101804400	Enhancers	HSMMtube	muscle
24	chr9:101801600-101804200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr9:101801600-101806200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
26	chr9:101801800-101803600	Enhancers	HUVEC	blood vessel
27	chr9:101801800-101803800	Enhancers	Primary B cells from peripheral blood	blood
28	chr9:101801800-101803800	Enhancers	NHEK	skin
29	chr9:101801800-101804000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr9:101801800-101804000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr9:101801800-101804000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr9:101801800-101804000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr9:101801800-101804200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr9:101801800-101804200	Enhancers	Primary B cells from cord blood	blood
35	chr9:101801800-101804200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr9:101801800-101804200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr9:101801800-101804200	Enhancers	NH-A	brain
38	chr9:101801800-101804400	Enhancers	Placenta	Placenta
39	chr9:101801800-101804400	Enhancers	NHLF	lung
40	chr9:101801800-101804600	Enhancers	Primary hematopoietic stem cells short term culture	blood
41	chr9:101802000-101803600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr9:101802000-101804000	Enhancers	HMEC	breast
43	chr9:101802000-101804200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr9:101802000-101804200	Enhancers	Primary T cells fromperipheralblood	blood
45	chr9:101802000-101804200	Enhancers	Lung	lung
46	chr9:101802000-101804200	Enhancers	Placenta Amnion	Placenta Amnion
47	chr9:101802000-101804200	Enhancers	Hela-S3	cervix
48	chr9:101802200-101804000	Enhancers	ES-I3 Cell Line	embryonic stem cell
49	chr9:101802200-101804200	Enhancers	Primary hematopoietic stem cells	blood
50	chr9:101802200-101804200	Enhancers	Fetal Stomach	stomach

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