Variant report

Variant	rs10512262
Chromosome Location	chr9:101805008-101805009
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:101796547..101799706-chr9:101804532..101807252,3	K562	blood:
2	chr9:101803071..101805545-chr9:101877080..101878888,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs12001981	0.93[CEU][hapmap];0.92[GIH][hapmap];0.83[TSI][hapmap];0.82[ASN][1000 genomes]
rs12352174	0.93[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13291453	0.82[CEU][hapmap];0.82[ASN][1000 genomes]
rs13296166	0.87[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13302368	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1537505	0.93[CEU][hapmap];0.82[ASN][1000 genomes]
rs1537506	0.93[CEU][hapmap];0.92[GIH][hapmap];0.83[TSI][hapmap];0.82[ASN][1000 genomes]
rs16918146	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16918148	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16918154	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16918163	0.93[CEU][hapmap];0.84[CHD][hapmap];0.92[GIH][hapmap];0.81[JPT][hapmap];0.83[TSI][hapmap];0.81[ASN][1000 genomes]
rs2067986	1.00[CEU][hapmap];0.84[CHD][hapmap];0.92[GIH][hapmap];0.83[TSI][hapmap];0.82[ASN][1000 genomes]
rs34154744	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34382379	0.82[ASN][1000 genomes]
rs34654420	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34749011	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35413276	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4563947	0.93[CEU][hapmap];0.82[ASN][1000 genomes]
rs4631520	0.82[ASN][1000 genomes]
rs6478969	0.93[CEU][hapmap];0.84[CHD][hapmap];0.85[GIH][hapmap];0.82[ASN][1000 genomes]
rs7019613	1.00[CEU][hapmap];0.82[ASN][1000 genomes]
rs7036916	0.87[ASW][hapmap];0.93[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.81[MKK][hapmap];0.96[TSI][hapmap];0.88[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs71501887	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7851079	0.93[CEU][hapmap];1.00[TSI][hapmap];0.98[EUR][1000 genomes]
rs7854112	1.00[ASW][hapmap];0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.88[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7857774	0.93[CEU][hapmap]
rs928522	1.00[CEU][hapmap];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv466442	chr9:101788522-101816399	ZNF genes & repeats Enhancers Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv614954	chr9:101788522-101816399	Strong transcription Genic enhancers Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv893618	chr9:101800106-101886071	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101761600-101814400	Weak transcription	Gastric	stomach
2	chr9:101782000-101819800	Weak transcription	Colonic Mucosa	Colon
3	chr9:101787200-101806400	Weak transcription	Ovary	ovary
4	chr9:101789000-101812000	Weak transcription	Esophagus	oesophagus
5	chr9:101789200-101805400	Weak transcription	Right Ventricle	heart
6	chr9:101793800-101837600	Weak transcription	Psoas Muscle	Psoas
7	chr9:101796200-101806400	Strong transcription	Stomach Smooth Muscle	stomach
8	chr9:101798200-101811400	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr9:101798400-101819800	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr9:101799200-101814600	Weak transcription	Pancreas	Pancrea
11	chr9:101799400-101805200	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr9:101800200-101806800	Weak transcription	Rectal Smooth Muscle	rectum
13	chr9:101801600-101806200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr9:101802400-101809200	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr9:101803000-101805200	Weak transcription	Colon Smooth Muscle	Colon
16	chr9:101803200-101805800	Genic enhancers	Adipose Nuclei	Adipose
17	chr9:101803400-101805400	Weak transcription	Left Ventricle	heart
18	chr9:101803600-101806400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr9:101803600-101806400	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr9:101804000-101805400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr9:101804000-101806000	Strong transcription	Fetal Muscle Leg	muscle
22	chr9:101804000-101806400	Strong transcription	Fetal Muscle Trunk	muscle
23	chr9:101804000-101809600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
24	chr9:101804000-101820000	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr9:101804200-101805200	Weak transcription	Fetal Stomach	stomach
26	chr9:101804200-101805400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr9:101804200-101805400	Weak transcription	Lung	lung
28	chr9:101804200-101806200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr9:101804200-101806400	Weak transcription	Hela-S3	cervix
30	chr9:101804200-101806800	Weak transcription	Primary B cells from cord blood	blood
31	chr9:101804200-101809400	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr9:101804400-101805600	Weak transcription	HSMMtube	muscle
33	chr9:101804400-101806000	Weak transcription	Placenta	Placenta
34	chr9:101804400-101806000	Weak transcription	NHDF-Ad	bronchial
35	chr9:101804600-101809000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
36	chr9:101804800-101805800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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