Variant report

Variant	rs7857774
Chromosome Location	chr9:101821883-101821884
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:101820521..101822703-chr9:101866221..101868544,2	MCF-7	breast:
2	chr9:101819637..101822232-chr9:101894406..101896072,2	K562	blood:

Variant related genes	Relation type
ENSG00000106799	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10512262	0.93[CEU][hapmap]
rs12000479	1.00[YRI][hapmap]
rs12001981	1.00[CEU][hapmap];0.93[CHB][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12352174	0.93[CEU][hapmap]
rs13291453	0.92[CEU][hapmap];0.94[CHB][hapmap];0.81[JPT][hapmap];0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs13296166	0.93[CEU][hapmap]
rs13302368	0.93[CEU][hapmap]
rs1537505	1.00[CEU][hapmap];0.94[CHB][hapmap];0.84[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1537506	1.00[CEU][hapmap];0.93[CHB][hapmap];0.83[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16918148	0.93[CEU][hapmap]
rs16918163	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2067986	0.93[CEU][hapmap];0.93[CHB][hapmap];0.83[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34382379	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4563947	1.00[CEU][hapmap];0.94[CHB][hapmap];0.83[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4631520	0.94[CHB][hapmap];0.84[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6478969	1.00[CEU][hapmap];0.93[CHB][hapmap];0.83[JPT][hapmap];0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7019613	0.91[CEU][hapmap];0.93[CHB][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs7030799	0.82[CEU][hapmap]
rs7035813	1.00[YRI][hapmap]
rs7036916	1.00[CEU][hapmap]
rs7047475	0.82[CEU][hapmap]
rs7851079	1.00[CEU][hapmap]
rs7854112	1.00[CEU][hapmap]
rs928522	0.93[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893618	chr9:101800106-101886071	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101793800-101837600	Weak transcription	Psoas Muscle	Psoas
2	chr9:101807000-101831800	Strong transcription	Fetal Muscle Trunk	muscle
3	chr9:101807600-101831800	Strong transcription	Fetal Muscle Leg	muscle
4	chr9:101813200-101833000	Weak transcription	Lung	lung
5	chr9:101813600-101825600	Weak transcription	Aorta	Aorta
6	chr9:101814200-101826600	Weak transcription	Fetal Intestine Large	intestine
7	chr9:101814200-101829400	Weak transcription	Fetal Intestine Small	intestine
8	chr9:101816200-101844200	Weak transcription	Gastric	stomach
9	chr9:101816800-101822400	Enhancers	Osteobl	bone
10	chr9:101818000-101834800	Weak transcription	Pancreas	Pancrea
11	chr9:101818800-101823600	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr9:101818800-101829000	Weak transcription	Ovary	ovary
13	chr9:101819000-101822000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr9:101819200-101822400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr9:101819200-101822400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
16	chr9:101819400-101822000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
17	chr9:101819400-101822200	Enhancers	NHLF	lung
18	chr9:101819400-101822400	Enhancers	Spleen	Spleen
19	chr9:101819600-101822200	Flanking Active TSS	Primary B cells from cord blood	blood
20	chr9:101819600-101822200	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
21	chr9:101819600-101822200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr9:101819800-101822200	Flanking Active TSS	Primary T cells from cord blood	blood
23	chr9:101819800-101822200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
24	chr9:101819800-101822200	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr9:101819800-101823400	Strong transcription	Fetal Stomach	stomach
26	chr9:101820000-101822000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr9:101820000-101822200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
28	chr9:101820000-101822200	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr9:101820000-101822400	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
30	chr9:101820000-101822400	Enhancers	Sigmoid Colon	Sigmoid Colon
31	chr9:101820000-101823200	Enhancers	Rectal Mucosa Donor 31	rectum
32	chr9:101820200-101822400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr9:101820200-101823200	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr9:101820200-101831000	Weak transcription	Colonic Mucosa	Colon
35	chr9:101820400-101828000	Weak transcription	Right Atrium	heart
36	chr9:101820600-101822200	Enhancers	Left Ventricle	heart
37	chr9:101820800-101822000	Enhancers	Muscle Satellite Cultured Cells	--
38	chr9:101820800-101822200	Enhancers	HSMM	muscle
39	chr9:101820800-101822400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
40	chr9:101820800-101822400	Enhancers	Duodenum Mucosa	Duodenum
41	chr9:101820800-101822400	Enhancers	Skeletal Muscle Female	skeletal muscle
42	chr9:101820800-101822400	Enhancers	NH-A	brain
43	chr9:101820800-101823000	Enhancers	Thymus	Thymus
44	chr9:101820800-101823200	Enhancers	Fetal Thymus	thymus
45	chr9:101820800-101823200	Enhancers	Dnd41	blood
46	chr9:101820800-101823400	Enhancers	Primary B cells from peripheral blood	blood
47	chr9:101820800-101828000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr9:101821000-101823200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
49	chr9:101821000-101823200	Enhancers	K562	blood
50	chr9:101821200-101822000	Weak transcription	Placenta	Placenta

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