Variant report

Variant	rs7030799
Chromosome Location	chr9:101822462-101822463
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:101820521..101822703-chr9:101866221..101868544,2	MCF-7	breast:
2	chr9:100746335..100748761-chr9:101822195..101824561,2	K562	blood:

Variant related genes	Relation type
ENSG00000106799	Chromatin interaction
ENSG00000136938	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1051105	0.83[AMR][1000 genomes]
rs11789439	0.88[CEU][hapmap];0.90[JPT][hapmap]
rs12001981	0.81[CEU][hapmap]
rs13296447	0.86[YRI][hapmap];0.80[AMR][1000 genomes]
rs1413298	0.84[CHB][hapmap];0.80[JPT][hapmap];0.93[YRI][hapmap];0.92[ASN][1000 genomes]
rs1537505	0.82[CEU][hapmap]
rs1537506	0.81[CEU][hapmap]
rs16918163	0.81[CEU][hapmap]
rs16918167	0.82[CEU][hapmap];0.85[EUR][1000 genomes]
rs16918198	0.80[ASN][1000 genomes]
rs34111295	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34863444	0.80[AMR][1000 genomes]
rs3780617	0.84[CEU][hapmap];0.85[EUR][1000 genomes]
rs4480177	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4563947	0.82[CEU][hapmap]
rs4742759	0.90[YRI][hapmap];0.83[AMR][1000 genomes]
rs6478969	0.81[CEU][hapmap]
rs7031588	0.94[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7036916	0.81[CEU][hapmap]
rs7038068	0.88[CEU][hapmap]
rs7047475	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7851079	0.81[CEU][hapmap]
rs7854112	0.81[CEU][hapmap]
rs7857774	0.82[CEU][hapmap]
rs7874819	0.88[CEU][hapmap]
rs869776	0.88[CEU][hapmap]
rs885154	0.80[AMR][1000 genomes]
rs885155	0.81[AMR][1000 genomes]
rs914991	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893618	chr9:101800106-101886071	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101793800-101837600	Weak transcription	Psoas Muscle	Psoas
2	chr9:101807000-101831800	Strong transcription	Fetal Muscle Trunk	muscle
3	chr9:101807600-101831800	Strong transcription	Fetal Muscle Leg	muscle
4	chr9:101813200-101833000	Weak transcription	Lung	lung
5	chr9:101813600-101825600	Weak transcription	Aorta	Aorta
6	chr9:101814200-101826600	Weak transcription	Fetal Intestine Large	intestine
7	chr9:101814200-101829400	Weak transcription	Fetal Intestine Small	intestine
8	chr9:101816200-101844200	Weak transcription	Gastric	stomach
9	chr9:101818000-101834800	Weak transcription	Pancreas	Pancrea
10	chr9:101818800-101823600	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr9:101818800-101829000	Weak transcription	Ovary	ovary
12	chr9:101819800-101823400	Strong transcription	Fetal Stomach	stomach
13	chr9:101820000-101823200	Enhancers	Rectal Mucosa Donor 31	rectum
14	chr9:101820200-101823200	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr9:101820200-101831000	Weak transcription	Colonic Mucosa	Colon
16	chr9:101820400-101828000	Weak transcription	Right Atrium	heart
17	chr9:101820800-101823000	Enhancers	Thymus	Thymus
18	chr9:101820800-101823200	Enhancers	Fetal Thymus	thymus
19	chr9:101820800-101823200	Enhancers	Dnd41	blood
20	chr9:101820800-101823400	Enhancers	Primary B cells from peripheral blood	blood
21	chr9:101820800-101828000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr9:101821000-101823200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
23	chr9:101821000-101823200	Enhancers	K562	blood
24	chr9:101821200-101824200	Weak transcription	HSMMtube	muscle
25	chr9:101821200-101825600	Weak transcription	Right Ventricle	heart
26	chr9:101821800-101823200	Enhancers	Primary T cells fromperipheralblood	blood
27	chr9:101821800-101823400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
28	chr9:101821800-101824200	Enhancers	Primary T helper cells fromperipheralblood	blood
29	chr9:101821800-101824800	Weak transcription	Rectal Smooth Muscle	rectum
30	chr9:101821800-101827600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr9:101821800-101828400	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr9:101821800-101829000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr9:101821800-101834800	Strong transcription	Stomach Smooth Muscle	stomach
34	chr9:101822000-101822600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
35	chr9:101822000-101822800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr9:101822000-101823200	Genic enhancers	Placenta	Placenta
37	chr9:101822000-101823600	Enhancers	Primary T helper naive cells from peripheral blood	blood
38	chr9:101822000-101823600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
39	chr9:101822000-101834000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr9:101822200-101823000	Enhancers	Primary T cells from cord blood	blood
41	chr9:101822200-101823200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
42	chr9:101822200-101823200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
43	chr9:101822200-101823200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr9:101822200-101823600	Enhancers	Primary B cells from cord blood	blood
45	chr9:101822200-101823600	Enhancers	Primary hematopoietic stem cells	blood
46	chr9:101822200-101823600	Enhancers	Primary T helper cells PMA-I stimulated	--
47	chr9:101822200-101823600	Enhancers	Primary T killer memory cells from peripheral blood	blood
48	chr9:101822200-101823600	Weak transcription	Stomach Mucosa	stomach
49	chr9:101822200-101824400	Enhancers	Primary hematopoietic stem cells short term culture	blood
50	chr9:101822200-101827000	Strong transcription	Colon Smooth Muscle	Colon

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