Variant report

Variant	rs4742759
Chromosome Location	chr9:101831269-101831270
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:101828711..101831870-chr9:101834317..101838046,3	MCF-7	breast:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs1051105	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10988700	0.81[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11788920	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12683114	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12685226	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13296447	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1413298	0.81[CHB][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs1537504	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16918198	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34111295	0.83[AMR][1000 genomes]
rs34863444	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35312758	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4480177	0.81[AMR][1000 genomes]
rs4742756	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4742758	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4742760	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4742761	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4743321	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4743322	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4743323	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4743324	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4743325	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57992539	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7022000	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7025264	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7030799	0.90[YRI][hapmap];0.83[AMR][1000 genomes]
rs7031364	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7031588	0.86[YRI][hapmap];0.85[AMR][1000 genomes]
rs7046702	0.81[CEU][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7047475	0.90[YRI][hapmap];0.83[AMR][1000 genomes]
rs71494009	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7874183	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs885154	1.00[CEU][hapmap];0.95[CHB][hapmap];0.83[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs885155	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs914991	1.00[CEU][hapmap];0.90[CHB][hapmap];0.84[JPT][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs914992	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893618	chr9:101800106-101886071	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101793800-101837600	Weak transcription	Psoas Muscle	Psoas
2	chr9:101807000-101831800	Strong transcription	Fetal Muscle Trunk	muscle
3	chr9:101807600-101831800	Strong transcription	Fetal Muscle Leg	muscle
4	chr9:101813200-101833000	Weak transcription	Lung	lung
5	chr9:101816200-101844200	Weak transcription	Gastric	stomach
6	chr9:101818000-101834800	Weak transcription	Pancreas	Pancrea
7	chr9:101821800-101834800	Strong transcription	Stomach Smooth Muscle	stomach
8	chr9:101822000-101834000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr9:101822200-101832800	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr9:101822400-101832400	Weak transcription	NHDF-Ad	bronchial
11	chr9:101822400-101837600	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr9:101822400-101838600	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr9:101823000-101831400	Weak transcription	Thymus	Thymus
14	chr9:101823400-101831400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr9:101823400-101831600	Weak transcription	Primary B cells from peripheral blood	blood
16	chr9:101824000-101833200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr9:101824200-101831400	Strong transcription	Fetal Stomach	stomach
18	chr9:101825200-101836200	Weak transcription	Fetal Brain Female	brain
19	chr9:101826600-101833200	Weak transcription	Right Ventricle	heart
20	chr9:101826600-101848200	Weak transcription	Aorta	Aorta
21	chr9:101827000-101832400	Strong transcription	Adipose Nuclei	Adipose
22	chr9:101827600-101831400	Weak transcription	GM12878-XiMat	blood
23	chr9:101828600-101832200	Strong transcription	Colon Smooth Muscle	Colon
24	chr9:101828600-101832400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr9:101828600-101837000	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr9:101828800-101833000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr9:101828800-101833200	Weak transcription	Right Atrium	heart
28	chr9:101829000-101834600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr9:101829200-101831400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr9:101829200-101832200	Strong transcription	Duodenum Smooth Muscle	Duodenum
31	chr9:101829400-101831400	Weak transcription	HSMMtube	muscle
32	chr9:101829400-101831600	Weak transcription	NHLF	lung
33	chr9:101829400-101832000	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr9:101829400-101832200	Strong transcription	Placenta	Placenta
35	chr9:101829400-101832400	Weak transcription	HSMM	muscle
36	chr9:101829400-101832400	Weak transcription	NH-A	brain
37	chr9:101829600-101833400	Weak transcription	K562	blood
38	chr9:101829600-101834800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr9:101829800-101833200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr9:101830000-101832600	Weak transcription	Ovary	ovary
41	chr9:101830000-101837600	Weak transcription	Rectal Smooth Muscle	rectum
42	chr9:101830600-101832000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
43	chr9:101830600-101832800	Enhancers	Primary T killer memory cells from peripheral blood	blood
44	chr9:101830800-101831600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr9:101830800-101832200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
46	chr9:101830800-101832400	Enhancers	Primary T helper cells fromperipheralblood	blood
47	chr9:101830800-101832600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
48	chr9:101830800-101832600	Enhancers	Primary T helper cells PMA-I stimulated	--
49	chr9:101830800-101833200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
50	chr9:101830800-101833400	Enhancers	Primary T cells from cord blood	blood

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