Variant report

Variant	rs4742761
Chromosome Location	chr9:101839873-101839874
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:101670503..101672702-chr9:101838326..101840575,2	K562	blood:
2	chr9:101569650..101571206-chr9:101839302..101840931,2	MCF-7	breast:
3	chr9:101778937..101781130-chr9:101837801..101840651,3	K562	blood:
4	chr9:101835981..101841797-chr9:101884108..101889285,8	K562	blood:
5	chr9:101834831..101839915-chr9:101875600..101879100,5	K562	blood:

Variant related genes	Relation type
ENSG00000119514	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1051105	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10988700	0.82[CEU][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11788920	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12683114	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12685226	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13296447	0.95[CEU][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1537504	0.95[CEU][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16918198	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34863444	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35312758	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4742756	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4742758	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4742759	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4742760	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4743321	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4743322	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4743323	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4743324	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4743325	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs57992539	0.86[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7022000	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7025264	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7031364	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7046702	0.82[CEU][hapmap];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs71494009	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7874183	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs885154	1.00[CEU][hapmap];0.86[YRI][hapmap];0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs885155	1.00[CEU][hapmap];0.81[YRI][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs914991	1.00[CEU][hapmap];0.93[YRI][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs914992	1.00[CEU][hapmap];0.87[YRI][hapmap];0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893618	chr9:101800106-101886071	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv893619	chr9:101835165-101936231	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101816200-101844200	Weak transcription	Gastric	stomach
2	chr9:101826600-101848200	Weak transcription	Aorta	Aorta
3	chr9:101836600-101840200	Enhancers	Dnd41	blood
4	chr9:101836600-101842000	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr9:101836800-101840000	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr9:101837000-101840200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr9:101837000-101840200	Enhancers	Fetal Thymus	thymus
8	chr9:101837000-101840400	Enhancers	Primary T cells fromperipheralblood	blood
9	chr9:101837000-101840400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr9:101837200-101840400	Enhancers	Primary hematopoietic stem cells	blood
11	chr9:101837200-101840400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr9:101837400-101840000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr9:101837600-101840200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
14	chr9:101837600-101840400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr9:101837600-101841000	Enhancers	Primary T cells from cord blood	blood
16	chr9:101837800-101840200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
17	chr9:101838000-101841200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr9:101838800-101840000	Enhancers	GM12878-XiMat	blood
19	chr9:101839200-101840000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr9:101839200-101840800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr9:101839200-101841000	Weak transcription	Osteobl	bone
22	chr9:101839400-101840200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr9:101839400-101841000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr9:101839600-101840800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr9:101839600-101841000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr9:101839600-101841000	Weak transcription	HSMMtube	muscle
27	chr9:101839600-101841400	Enhancers	Primary T helper naive cells from peripheral blood	blood
28	chr9:101839600-101842000	Enhancers	Primary T helper cells PMA-I stimulated	--
29	chr9:101839600-101842000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr9:101839600-101844600	Weak transcription	Left Ventricle	heart
31	chr9:101839600-101849000	Weak transcription	Adipose Nuclei	Adipose
32	chr9:101839800-101840400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
33	chr9:101839800-101841200	Enhancers	Primary T killer memory cells from peripheral blood	blood
34	chr9:101839800-101841400	Enhancers	K562	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links