Variant report

Variant	rs7874183
Chromosome Location	chr9:101848586-101848587
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1051105	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.81[GIH][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10988700	0.82[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11788920	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12683114	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12685226	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13296447	0.95[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.89[TSI][hapmap];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1413298	0.88[CHD][hapmap]
rs1537504	0.95[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.95[MEX][hapmap];0.89[TSI][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16918198	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34863444	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35312758	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4742756	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.81[GIH][hapmap];0.95[JPT][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4742758	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4742759	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4742760	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4742761	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4743321	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4743322	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4743323	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4743324	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4743325	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs57992539	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7022000	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7025264	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7031364	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7046702	0.82[CEU][hapmap];1.00[MEX][hapmap];0.84[TSI][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs71494009	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs885154	1.00[CEU][hapmap];0.89[CHB][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs885155	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs914991	1.00[CEU][hapmap];0.85[CHB][hapmap];0.80[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs914992	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893618	chr9:101800106-101886071	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv893619	chr9:101835165-101936231	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7874183	TSTD2	cis	parietal	SCAN

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101839600-101849000	Weak transcription	Adipose Nuclei	Adipose
2	chr9:101840000-101853800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr9:101845400-101849600	Weak transcription	Left Ventricle	heart
4	chr9:101846000-101848600	Weak transcription	K562	blood
5	chr9:101846200-101858800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr9:101847200-101849000	Enhancers	Primary B cells from peripheral blood	blood
7	chr9:101847200-101850000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr9:101847400-101848600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr9:101847400-101849200	Enhancers	Colon Smooth Muscle	Colon
10	chr9:101847600-101848800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
11	chr9:101847600-101850000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr9:101847800-101849800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr9:101848000-101848600	Enhancers	HSMMtube	muscle
14	chr9:101848000-101848800	Enhancers	Primary T cells fromperipheralblood	blood
15	chr9:101848000-101848800	Enhancers	Primary T killer memory cells from peripheral blood	blood
16	chr9:101848000-101849000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
17	chr9:101848000-101849400	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr9:101848200-101848800	Enhancers	Primary T helper naive cells from peripheral blood	blood
19	chr9:101848200-101848800	Flanking Active TSS	Muscle Satellite Cultured Cells	--
20	chr9:101848200-101848800	Enhancers	Esophagus	oesophagus
21	chr9:101848200-101848800	Enhancers	Monocytes-CD14+_RO01746	blood
22	chr9:101848200-101849200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
23	chr9:101848200-101849200	Enhancers	Aorta	Aorta
24	chr9:101848200-101849200	Enhancers	NH-A	brain
25	chr9:101848200-101849400	Enhancers	Primary T cells from cord blood	blood
26	chr9:101848200-101849400	Enhancers	HSMM	muscle
27	chr9:101848200-101849800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr9:101848200-101849800	Enhancers	Brain Cingulate Gyrus	brain
29	chr9:101848200-101850200	Enhancers	Primary monocytes fromperipheralblood	blood
30	chr9:101848400-101848600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr9:101848400-101848600	Enhancers	Primary T helper cells fromperipheralblood	blood
32	chr9:101848400-101848600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr9:101848400-101848800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr9:101848400-101848800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
35	chr9:101848400-101848800	Flanking Active TSS	Osteobl	bone
36	chr9:101848400-101849400	Weak transcription	Placenta	Placenta
37	chr9:101848400-101849400	Weak transcription	Lung	lung
38	chr9:101848400-101849400	Weak transcription	Skeletal Muscle Male	skeletal muscle
39	chr9:101848400-101849400	Weak transcription	Skeletal Muscle Female	skeletal muscle

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