Variant report

Variant	rs16918198
Chromosome Location	chr9:101828772-101828773
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:101828711..101831870-chr9:101834317..101838046,3	MCF-7	breast:

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs1051105	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10988700	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11788920	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12683114	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12685226	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13296447	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1413298	0.83[ASN][1000 genomes]
rs1537504	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34111295	0.80[ASN][1000 genomes]
rs34863444	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35312758	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4742756	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4742758	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4742759	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4742760	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4742761	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4743321	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4743322	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4743323	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4743324	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4743325	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57992539	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7022000	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7025264	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7030799	0.80[ASN][1000 genomes]
rs7031364	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7046702	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7047475	0.80[ASN][1000 genomes]
rs71494009	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7874183	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs885154	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs885155	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs914991	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs914992	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893618	chr9:101800106-101886071	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101793800-101837600	Weak transcription	Psoas Muscle	Psoas
2	chr9:101807000-101831800	Strong transcription	Fetal Muscle Trunk	muscle
3	chr9:101807600-101831800	Strong transcription	Fetal Muscle Leg	muscle
4	chr9:101813200-101833000	Weak transcription	Lung	lung
5	chr9:101814200-101829400	Weak transcription	Fetal Intestine Small	intestine
6	chr9:101816200-101844200	Weak transcription	Gastric	stomach
7	chr9:101818000-101834800	Weak transcription	Pancreas	Pancrea
8	chr9:101818800-101829000	Weak transcription	Ovary	ovary
9	chr9:101820200-101831000	Weak transcription	Colonic Mucosa	Colon
10	chr9:101821800-101829000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr9:101821800-101834800	Strong transcription	Stomach Smooth Muscle	stomach
12	chr9:101822000-101834000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr9:101822200-101829000	Weak transcription	Left Ventricle	heart
14	chr9:101822200-101832800	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr9:101822400-101832400	Weak transcription	NHDF-Ad	bronchial
16	chr9:101822400-101837600	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr9:101822400-101838600	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr9:101823000-101831400	Weak transcription	Thymus	Thymus
19	chr9:101823200-101831000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr9:101823400-101830800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr9:101823400-101831400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr9:101823400-101831600	Weak transcription	Primary B cells from peripheral blood	blood
23	chr9:101823600-101830800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr9:101824000-101833200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr9:101824200-101831400	Strong transcription	Fetal Stomach	stomach
26	chr9:101824400-101831200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr9:101825200-101836200	Weak transcription	Fetal Brain Female	brain
28	chr9:101825600-101830600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr9:101825800-101830800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr9:101826000-101830800	Weak transcription	Primary T helper cells fromperipheralblood	blood
31	chr9:101826200-101830800	Weak transcription	Primary T cells from cord blood	blood
32	chr9:101826200-101830800	Weak transcription	Primary T helper cells PMA-I stimulated	--
33	chr9:101826400-101829000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr9:101826600-101833200	Weak transcription	Right Ventricle	heart
35	chr9:101826600-101848200	Weak transcription	Aorta	Aorta
36	chr9:101826800-101831000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr9:101827000-101830800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
38	chr9:101827000-101832400	Strong transcription	Adipose Nuclei	Adipose
39	chr9:101827200-101830000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
40	chr9:101827600-101829200	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr9:101827600-101829400	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr9:101827600-101831400	Weak transcription	GM12878-XiMat	blood
43	chr9:101828000-101828800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr9:101828000-101828800	Enhancers	Right Atrium	heart
45	chr9:101828000-101829400	Enhancers	HSMM	muscle
46	chr9:101828000-101829600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr9:101828200-101828800	Weak transcription	Rectal Smooth Muscle	rectum
48	chr9:101828200-101829400	Enhancers	Primary T cells fromperipheralblood	blood
49	chr9:101828200-101829400	Enhancers	HSMMtube	muscle
50	chr9:101828400-101829400	Genic enhancers	Placenta	Placenta

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