Variant report

Variant	rs7046702
Chromosome Location	chr9:101851907-101851908
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:101851060..101855206-chr9:101866363..101870342,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000106799	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1051105	0.81[CEU][hapmap];0.95[MEX][hapmap];0.84[TSI][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10988700	1.00[CEU][hapmap];0.81[CHB][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11788920	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12683114	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12685226	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13296447	0.95[MEX][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1537504	0.95[MEX][hapmap];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs16918198	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34863444	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35312758	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4742756	0.82[CEU][hapmap];0.84[TSI][hapmap];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4742758	0.82[CEU][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4742759	0.81[CEU][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4742760	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4742761	0.82[CEU][hapmap];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4743321	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4743322	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4743323	0.82[CEU][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4743324	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4743325	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs57992539	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7022000	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7025264	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7031364	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs71494009	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7874183	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs885154	0.81[CEU][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs885155	0.82[CEU][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs914991	0.82[CEU][hapmap];0.81[CHD][hapmap];0.82[GIH][hapmap];0.85[LWK][hapmap];0.95[MEX][hapmap];0.84[TSI][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs914992	0.82[CEU][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893618	chr9:101800106-101886071	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv893619	chr9:101835165-101936231	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7046702	COL15A1	cis	lymphoblastoid	seeQTL

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101840000-101853800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
2	chr9:101846200-101858800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:101848600-101853400	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr9:101848800-101852800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr9:101848800-101853800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr9:101849200-101852200	Weak transcription	NHDF-Ad	bronchial
7	chr9:101849200-101852400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr9:101849400-101852600	Weak transcription	HSMM	muscle
9	chr9:101849800-101852400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr9:101849800-101852600	Weak transcription	Osteobl	bone
11	chr9:101849800-101853200	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr9:101849800-101853800	Weak transcription	Placenta	Placenta
13	chr9:101850000-101852200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr9:101850400-101853200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr9:101851600-101852200	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
16	chr9:101851800-101858400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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