Variant report

Variant	rs71494009
Chromosome Location	chr9:101841240-101841241
allele	CAC/GAG
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:101835981..101841797-chr9:101884108..101889285,8	K562	blood:
2	chr9:101617519..101620318-chr9:101840795..101842783,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1051105	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10988700	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11788920	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12683114	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12685226	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13296447	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1537504	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16918198	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34863444	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35312758	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4742756	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4742758	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4742759	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4742760	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4742761	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4743321	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4743322	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4743323	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4743324	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4743325	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs57992539	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7022000	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7025264	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7031364	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7046702	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7874183	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs885154	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs885155	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs914991	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs914992	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893618	chr9:101800106-101886071	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv893619	chr9:101835165-101936231	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101816200-101844200	Weak transcription	Gastric	stomach
2	chr9:101826600-101848200	Weak transcription	Aorta	Aorta
3	chr9:101836600-101842000	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr9:101839600-101841400	Enhancers	Primary T helper naive cells from peripheral blood	blood
5	chr9:101839600-101842000	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr9:101839600-101842000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr9:101839600-101844600	Weak transcription	Left Ventricle	heart
8	chr9:101839600-101849000	Weak transcription	Adipose Nuclei	Adipose
9	chr9:101839800-101841400	Enhancers	K562	blood
10	chr9:101840000-101853800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr9:101840200-101847600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr9:101840400-101841400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr9:101840800-101841600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr9:101840800-101841600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr9:101840800-101842000	Enhancers	Primary T cells fromperipheralblood	blood
16	chr9:101841000-101841400	Enhancers	Osteobl	bone
17	chr9:101841000-101841800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr9:101841000-101841800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr9:101841000-101841800	Enhancers	HSMMtube	muscle
20	chr9:101841200-101841400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr9:101841200-101841400	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr9:101841200-101841400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
23	chr9:101841200-101841400	Enhancers	NH-A	brain
24	chr9:101841200-101841600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr9:101841200-101841600	Enhancers	iPS-18 Cell Line	embryonic stem cell
26	chr9:101841200-101841800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr9:101841200-101842000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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