Variant report

Variant	rs7025264
Chromosome Location	chr9:101847179-101847180
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:101845860..101848098-chr9:101866094..101867977,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000106799	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1051105	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10988700	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11788920	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12683114	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12685226	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13296447	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1537504	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16918198	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34863444	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35312758	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4742756	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4742758	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4742759	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4742760	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4742761	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4743321	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4743322	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4743323	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4743324	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4743325	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs57992539	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7022000	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7031364	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7046702	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs71494009	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7874183	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs885154	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs885155	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs914991	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs914992	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893618	chr9:101800106-101886071	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv893619	chr9:101835165-101936231	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101826600-101848200	Weak transcription	Aorta	Aorta
2	chr9:101839600-101849000	Weak transcription	Adipose Nuclei	Adipose
3	chr9:101840000-101853800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr9:101840200-101847600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
5	chr9:101841400-101848000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr9:101841800-101848000	Weak transcription	HSMMtube	muscle
7	chr9:101842000-101847200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr9:101842000-101847600	Weak transcription	Primary T helper cells fromperipheralblood	blood
9	chr9:101842000-101848000	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr9:101844400-101847200	Weak transcription	Lung	lung
11	chr9:101845400-101849600	Weak transcription	Left Ventricle	heart
12	chr9:101846000-101848600	Weak transcription	K562	blood
13	chr9:101846200-101858800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr9:101846800-101848400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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