Variant report

Variant	rs7038068
Chromosome Location	chr9:101819844-101819845
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:101819756..101821876-chr9:101984546..101986258,2	K562	blood:
2	chr9:101778237..101780848-chr9:101819627..101821830,2	K562	blood:
3	chr9:101819637..101822232-chr9:101894406..101896072,2	K562	blood:
4	chr9:101797638..101801423-chr9:101817658..101821818,3	K562	blood:

Variant related genes	Relation type
ENSG00000106803	Chromatin interaction
ENSG00000204291	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11788317	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11789439	1.00[CEU][hapmap];0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs16918167	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3780617	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3780620	0.88[JPT][hapmap];0.82[ASN][1000 genomes]
rs4743312	0.81[ASN][1000 genomes]
rs4743313	0.81[ASN][1000 genomes]
rs4743314	0.88[JPT][hapmap]
rs7030799	0.88[CEU][hapmap]
rs7031588	0.81[CEU][hapmap]
rs7047475	0.88[CEU][hapmap]
rs7855612	0.84[ASN][1000 genomes]
rs7874819	0.87[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs869776	0.87[CEU][hapmap];0.81[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs976241	0.81[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893618	chr9:101800106-101886071	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101793800-101837600	Weak transcription	Psoas Muscle	Psoas
2	chr9:101804000-101820000	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr9:101805800-101820600	Weak transcription	Right Ventricle	heart
4	chr9:101807000-101831800	Strong transcription	Fetal Muscle Trunk	muscle
5	chr9:101807600-101831800	Strong transcription	Fetal Muscle Leg	muscle
6	chr9:101809200-101821600	Weak transcription	Brain Anterior Caudate	brain
7	chr9:101811200-101820000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr9:101813200-101833000	Weak transcription	Lung	lung
9	chr9:101813600-101825600	Weak transcription	Aorta	Aorta
10	chr9:101814200-101820200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
11	chr9:101814200-101826600	Weak transcription	Fetal Intestine Large	intestine
12	chr9:101814200-101829400	Weak transcription	Fetal Intestine Small	intestine
13	chr9:101814400-101820200	Enhancers	Thymus	Thymus
14	chr9:101814800-101820000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr9:101814800-101820200	Weak transcription	Right Atrium	heart
16	chr9:101815600-101820600	Strong transcription	Stomach Smooth Muscle	stomach
17	chr9:101815600-101821400	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr9:101816200-101844200	Weak transcription	Gastric	stomach
19	chr9:101816600-101820000	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr9:101816800-101821200	Enhancers	HMEC	breast
21	chr9:101816800-101822400	Enhancers	Osteobl	bone
22	chr9:101817000-101820200	Strong transcription	Duodenum Smooth Muscle	Duodenum
23	chr9:101817000-101821600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr9:101817400-101820000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr9:101817600-101820000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr9:101817600-101820200	Enhancers	Primary B cells from peripheral blood	blood
27	chr9:101817600-101821000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr9:101818000-101834800	Weak transcription	Pancreas	Pancrea
29	chr9:101818200-101820000	Enhancers	Primary hematopoietic stem cells	blood
30	chr9:101818400-101820400	Enhancers	Fetal Thymus	thymus
31	chr9:101818800-101820000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr9:101818800-101820000	Weak transcription	Placenta	Placenta
33	chr9:101818800-101820600	Weak transcription	Left Ventricle	heart
34	chr9:101818800-101823600	Enhancers	Primary monocytes fromperipheralblood	blood
35	chr9:101818800-101829000	Weak transcription	Ovary	ovary
36	chr9:101819000-101820000	Enhancers	Muscle Satellite Cultured Cells	--
37	chr9:101819000-101820000	Weak transcription	Colon Smooth Muscle	Colon
38	chr9:101819000-101820800	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
39	chr9:101819000-101821600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
40	chr9:101819000-101822000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr9:101819200-101820000	Enhancers	Dnd41	blood
42	chr9:101819200-101821600	Enhancers	NHDF-Ad	bronchial
43	chr9:101819200-101822400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr9:101819200-101822400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
45	chr9:101819400-101821000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
46	chr9:101819400-101821200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
47	chr9:101819400-101821400	Genic enhancers	Adipose Nuclei	Adipose
48	chr9:101819400-101821800	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr9:101819400-101821800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr9:101819400-101822000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood

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