Variant report

Variant	rs4743312
Chromosome Location	chr9:101791934-101791935
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:101786238..101788647-chr9:101789289..101792240,2	K562	blood:
2	chr9:101781442..101783754-chr9:101790736..101792592,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11788317	0.81[ASN][1000 genomes]
rs12683611	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs16918167	0.81[ASN][1000 genomes]
rs3780617	0.81[ASN][1000 genomes]
rs3780620	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4743311	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4743313	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4743314	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7038068	0.81[ASN][1000 genomes]
rs7855612	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7874819	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs869776	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs976241	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv466442	chr9:101788522-101816399	ZNF genes & repeats Enhancers Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv614954	chr9:101788522-101816399	Strong transcription Genic enhancers Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101761600-101814400	Weak transcription	Gastric	stomach
2	chr9:101773000-101793600	Weak transcription	Aorta	Aorta
3	chr9:101782000-101819800	Weak transcription	Colonic Mucosa	Colon
4	chr9:101786400-101794200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr9:101786600-101794000	Strong transcription	Fetal Muscle Trunk	muscle
6	chr9:101786600-101794000	Strong transcription	Fetal Muscle Leg	muscle
7	chr9:101787200-101806400	Weak transcription	Ovary	ovary
8	chr9:101787800-101792200	Weak transcription	Hela-S3	cervix
9	chr9:101788200-101803200	Weak transcription	Spleen	Spleen
10	chr9:101788800-101792600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr9:101788800-101798400	Weak transcription	Pancreas	Pancrea
12	chr9:101789000-101793200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr9:101789000-101796600	Weak transcription	Rectal Smooth Muscle	rectum
14	chr9:101789000-101812000	Weak transcription	Esophagus	oesophagus
15	chr9:101789200-101793000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr9:101789200-101796600	Weak transcription	Colon Smooth Muscle	Colon
17	chr9:101789200-101805400	Weak transcription	Right Ventricle	heart
18	chr9:101789400-101797400	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr9:101790000-101797200	Weak transcription	Left Ventricle	heart
20	chr9:101790400-101792400	Weak transcription	K562	blood
21	chr9:101790400-101794000	Enhancers	Placenta	Placenta
22	chr9:101790400-101795600	Weak transcription	Fetal Thymus	thymus
23	chr9:101790400-101795800	Weak transcription	Primary T helper cells fromperipheralblood	blood
24	chr9:101790400-101796400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr9:101790400-101797400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
26	chr9:101790400-101797800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
27	chr9:101790600-101792400	Weak transcription	Stomach Smooth Muscle	stomach
28	chr9:101790600-101797600	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr9:101790800-101796000	Weak transcription	Fetal Stomach	stomach
30	chr9:101790800-101796400	Weak transcription	Primary T cells fromperipheralblood	blood
31	chr9:101791000-101793400	Enhancers	Primary monocytes fromperipheralblood	blood
32	chr9:101791000-101797200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr9:101791200-101792800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr9:101791200-101792800	Enhancers	Osteobl	bone
35	chr9:101791200-101793000	Enhancers	Monocytes-CD14+_RO01746	blood
36	chr9:101791200-101793600	Enhancers	Placenta Amnion	Placenta Amnion
37	chr9:101791200-101793800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr9:101791200-101793800	Enhancers	NHDF-Ad	bronchial
39	chr9:101791200-101794000	Enhancers	NHLF	lung
40	chr9:101791200-101800600	Weak transcription	Brain Germinal Matrix	brain
41	chr9:101791400-101792200	Enhancers	HSMM	muscle
42	chr9:101791400-101792400	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood
43	chr9:101791400-101793600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr9:101791400-101793600	Enhancers	Muscle Satellite Cultured Cells	--
45	chr9:101791400-101793600	Enhancers	NH-A	brain
46	chr9:101791600-101793400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
47	chr9:101791600-101793400	Genic enhancers	Adipose Nuclei	Adipose
48	chr9:101791600-101793800	Enhancers	HSMMtube	muscle
49	chr9:101791600-101797600	Weak transcription	Primary T cells from cord blood	blood
50	chr9:101791800-101792600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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