Variant report

Variant	rs4743314
Chromosome Location	chr9:101793298-101793299
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:101792664..101795023-chr9:101864958..101868236,3	MCF-7	breast:
2	chr9:101788302..101790409-chr9:101792306..101794930,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000106799	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs16918167	0.88[JPT][hapmap]
rs3780617	0.89[JPT][hapmap]
rs3780620	0.88[JPT][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4743312	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4743313	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7038068	0.88[JPT][hapmap]
rs7855612	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7874819	0.82[CHB][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs869776	0.82[CHB][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs976241	0.83[CHB][hapmap];0.94[JPT][hapmap];0.97[YRI][hapmap];0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv466442	chr9:101788522-101816399	ZNF genes & repeats Enhancers Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv614954	chr9:101788522-101816399	Strong transcription Genic enhancers Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	esv3401197	chr9:101792889-101793430	Genic enhancers Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101761600-101814400	Weak transcription	Gastric	stomach
2	chr9:101773000-101793600	Weak transcription	Aorta	Aorta
3	chr9:101782000-101819800	Weak transcription	Colonic Mucosa	Colon
4	chr9:101786400-101794200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr9:101786600-101794000	Strong transcription	Fetal Muscle Trunk	muscle
6	chr9:101786600-101794000	Strong transcription	Fetal Muscle Leg	muscle
7	chr9:101787200-101806400	Weak transcription	Ovary	ovary
8	chr9:101788200-101803200	Weak transcription	Spleen	Spleen
9	chr9:101788800-101798400	Weak transcription	Pancreas	Pancrea
10	chr9:101789000-101796600	Weak transcription	Rectal Smooth Muscle	rectum
11	chr9:101789000-101812000	Weak transcription	Esophagus	oesophagus
12	chr9:101789200-101796600	Weak transcription	Colon Smooth Muscle	Colon
13	chr9:101789200-101805400	Weak transcription	Right Ventricle	heart
14	chr9:101789400-101797400	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr9:101790000-101797200	Weak transcription	Left Ventricle	heart
16	chr9:101790400-101794000	Enhancers	Placenta	Placenta
17	chr9:101790400-101795600	Weak transcription	Fetal Thymus	thymus
18	chr9:101790400-101795800	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr9:101790400-101796400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr9:101790400-101797400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr9:101790400-101797800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr9:101790600-101797600	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr9:101790800-101796000	Weak transcription	Fetal Stomach	stomach
24	chr9:101790800-101796400	Weak transcription	Primary T cells fromperipheralblood	blood
25	chr9:101791000-101793400	Enhancers	Primary monocytes fromperipheralblood	blood
26	chr9:101791000-101797200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr9:101791200-101793600	Enhancers	Placenta Amnion	Placenta Amnion
28	chr9:101791200-101793800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr9:101791200-101793800	Enhancers	NHDF-Ad	bronchial
30	chr9:101791200-101794000	Enhancers	NHLF	lung
31	chr9:101791200-101800600	Weak transcription	Brain Germinal Matrix	brain
32	chr9:101791400-101793600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr9:101791400-101793600	Enhancers	Muscle Satellite Cultured Cells	--
34	chr9:101791400-101793600	Enhancers	NH-A	brain
35	chr9:101791600-101793400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr9:101791600-101793400	Genic enhancers	Adipose Nuclei	Adipose
37	chr9:101791600-101793800	Enhancers	HSMMtube	muscle
38	chr9:101791600-101797600	Weak transcription	Primary T cells from cord blood	blood
39	chr9:101792200-101793400	Enhancers	Hela-S3	cervix
40	chr9:101792400-101794400	Enhancers	K562	blood
41	chr9:101792600-101793400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr9:101792600-101793600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
43	chr9:101792600-101794000	Enhancers	HSMM	muscle
44	chr9:101792800-101793400	Weak transcription	Stomach Smooth Muscle	stomach
45	chr9:101792800-101793600	Flanking Active TSS	Osteobl	bone
46	chr9:101793000-101793400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr9:101793000-101793800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr9:101793000-101794000	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr9:101793200-101793600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
50	chr9:101793200-101793800	Enhancers	Psoas Muscle	Psoas

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