Variant report

Variant	rs12352174
Chromosome Location	chr9:101811086-101811087
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:101801421..101804201-chr9:101810789..101812954,3	K562	blood:
2	chr9:101797627..101800388-chr9:101810354..101812234,3	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10512262	0.93[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12001981	1.00[CEU][hapmap];0.83[ASN][1000 genomes]
rs13291453	0.84[CEU][hapmap];0.83[ASN][1000 genomes]
rs13296166	0.93[CEU][hapmap];0.83[CHB][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13302368	0.93[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1537505	0.93[CEU][hapmap];0.82[ASN][1000 genomes]
rs1537506	1.00[CEU][hapmap];0.83[ASN][1000 genomes]
rs16918146	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16918148	0.86[CEU][hapmap];0.93[CHB][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16918154	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16918163	1.00[CEU][hapmap];0.82[ASN][1000 genomes]
rs2067986	0.93[CEU][hapmap];0.83[ASN][1000 genomes]
rs34154744	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs34382379	0.83[ASN][1000 genomes]
rs34654420	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34749011	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35413276	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4563947	0.93[CEU][hapmap];0.83[ASN][1000 genomes]
rs4631520	0.83[ASN][1000 genomes]
rs6478969	1.00[CEU][hapmap];0.83[ASN][1000 genomes]
rs7019613	0.84[CEU][hapmap];0.83[ASN][1000 genomes]
rs7036916	1.00[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs71501887	0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7851079	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs7854112	1.00[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7857774	0.93[CEU][hapmap]
rs928522	0.87[CEU][hapmap];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv466442	chr9:101788522-101816399	ZNF genes & repeats Enhancers Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
2	nsv614954	chr9:101788522-101816399	Strong transcription Genic enhancers Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv893618	chr9:101800106-101886071	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101761600-101814400	Weak transcription	Gastric	stomach
2	chr9:101782000-101819800	Weak transcription	Colonic Mucosa	Colon
3	chr9:101789000-101812000	Weak transcription	Esophagus	oesophagus
4	chr9:101793800-101837600	Weak transcription	Psoas Muscle	Psoas
5	chr9:101798200-101811400	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr9:101798400-101819800	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr9:101799200-101814600	Weak transcription	Pancreas	Pancrea
8	chr9:101804000-101820000	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr9:101805800-101819400	Strong transcription	Adipose Nuclei	Adipose
10	chr9:101805800-101820600	Weak transcription	Right Ventricle	heart
11	chr9:101806600-101817000	Weak transcription	Left Ventricle	heart
12	chr9:101807000-101831800	Strong transcription	Fetal Muscle Trunk	muscle
13	chr9:101807200-101811400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr9:101807400-101811600	Weak transcription	NHDF-Ad	bronchial
15	chr9:101807400-101814200	Weak transcription	Small Intestine	intestine
16	chr9:101807400-101819000	Strong transcription	Fetal Stomach	stomach
17	chr9:101807600-101811800	Weak transcription	Lung	lung
18	chr9:101807600-101812000	Weak transcription	Aorta	Aorta
19	chr9:101807600-101831800	Strong transcription	Fetal Muscle Leg	muscle
20	chr9:101807800-101819800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
21	chr9:101808400-101817200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr9:101808600-101812600	Weak transcription	HSMMtube	muscle
23	chr9:101808800-101811200	Enhancers	Placenta	Placenta
24	chr9:101809200-101811200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr9:101809200-101812200	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr9:101809200-101821600	Weak transcription	Brain Anterior Caudate	brain
27	chr9:101809600-101811200	Weak transcription	Primary T helper cells PMA-I stimulated	--
28	chr9:101809600-101811400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr9:101809800-101811200	Weak transcription	Rectal Smooth Muscle	rectum
30	chr9:101809800-101815000	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr9:101810000-101811400	Weak transcription	K562	blood
32	chr9:101810000-101813000	Strong transcription	Colon Smooth Muscle	Colon
33	chr9:101810400-101811800	Weak transcription	HSMM	muscle
34	chr9:101810400-101816200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr9:101810600-101814600	Strong transcription	Stomach Smooth Muscle	stomach
36	chr9:101810600-101814600	Weak transcription	Spleen	Spleen
37	chr9:101810600-101816000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr9:101810600-101817600	Weak transcription	Ovary	ovary
39	chr9:101810600-101819800	Enhancers	Primary T cells fromperipheralblood	blood
40	chr9:101810800-101813200	Weak transcription	Fetal Intestine Small	intestine
41	chr9:101810800-101813400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr9:101810800-101814600	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr9:101811000-101811400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr9:101811000-101813600	Strong transcription	Duodenum Smooth Muscle	Duodenum
45	chr9:101811000-101814000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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