Variant report

Variant	rs16920084
Chromosome Location	chr12:32760956-32760957
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10506096	1.00[AMR][1000 genomes]
rs11832493	1.00[AMR][1000 genomes]
rs16920116	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16920125	1.00[AMR][1000 genomes]
rs55653318	1.00[AMR][1000 genomes]
rs55765989	1.00[AMR][1000 genomes]
rs55961287	1.00[AMR][1000 genomes]
rs56160613	1.00[AMR][1000 genomes]
rs56231715	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57389939	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58682304	1.00[AMR][1000 genomes]
rs59023860	1.00[AMR][1000 genomes]
rs59450415	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59670367	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60330503	1.00[AMR][1000 genomes]
rs74072663	1.00[AMR][1000 genomes]
rs74072674	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74072685	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74073029	1.00[AMR][1000 genomes]
rs74073061	1.00[AMR][1000 genomes]
rs74073064	1.00[AMR][1000 genomes]
rs74073069	1.00[AMR][1000 genomes]
rs7975080	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs877129	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531960	chr12:32257285-32775277	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:32713000-32780400	Weak transcription	Rectal Smooth Muscle	rectum
2	chr12:32713400-32796200	Weak transcription	Fetal Lung	lung
3	chr12:32720000-32764800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr12:32720200-32778400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr12:32722600-32764800	Weak transcription	Brain Cingulate Gyrus	brain
6	chr12:32722600-32764800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr12:32722600-32764800	Weak transcription	Psoas Muscle	Psoas
8	chr12:32722600-32779400	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr12:32725200-32778600	Weak transcription	Fetal Brain Male	brain
10	chr12:32733200-32764800	Weak transcription	Esophagus	oesophagus
11	chr12:32735400-32765000	Weak transcription	Small Intestine	intestine
12	chr12:32736200-32764000	Weak transcription	Brain Germinal Matrix	brain
13	chr12:32739800-32764600	Weak transcription	NHLF	lung
14	chr12:32741200-32762000	Weak transcription	Right Ventricle	heart
15	chr12:32741600-32761200	Weak transcription	Brain Anterior Caudate	brain
16	chr12:32741800-32769600	Weak transcription	Stomach Mucosa	stomach
17	chr12:32742000-32764800	Weak transcription	Spleen	Spleen
18	chr12:32742400-32765600	Weak transcription	Primary B cells from peripheral blood	blood
19	chr12:32743800-32764600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr12:32744200-32797600	Weak transcription	Fetal Heart	heart
21	chr12:32744800-32762000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr12:32744800-32765000	Weak transcription	Brain Substantia Nigra	brain
23	chr12:32745000-32764400	Weak transcription	Lung	lung
24	chr12:32749000-32764200	Weak transcription	Stomach Smooth Muscle	stomach
25	chr12:32749000-32764800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
26	chr12:32750000-32762200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr12:32750000-32765000	Strong transcription	Adipose Nuclei	Adipose
28	chr12:32750000-32770400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr12:32752000-32762000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr12:32753000-32774200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr12:32754200-32795200	Weak transcription	Primary B cells from cord blood	blood
32	chr12:32754600-32766800	Weak transcription	NH-A	brain
33	chr12:32754800-32764600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr12:32755000-32762000	Weak transcription	Left Ventricle	heart
35	chr12:32755000-32764800	Weak transcription	Colonic Mucosa	Colon
36	chr12:32755000-32775800	Strong transcription	Primary neutrophils fromperipheralblood	blood
37	chr12:32755200-32762200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr12:32755400-32800600	Strong transcription	Monocytes-CD14+_RO01746	blood
39	chr12:32755600-32764400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr12:32755600-32764600	Weak transcription	Brain Hippocampus Middle	brain
41	chr12:32755600-32765200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr12:32756200-32789800	Strong transcription	Primary monocytes fromperipheralblood	blood
43	chr12:32756800-32763200	Strong transcription	Fetal Intestine Large	intestine
44	chr12:32756800-32767400	Strong transcription	Rectal Mucosa Donor 31	rectum
45	chr12:32757000-32783400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
46	chr12:32757200-32764600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
47	chr12:32757400-32767400	Strong transcription	Duodenum Mucosa	Duodenum
48	chr12:32757400-32799600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr12:32757600-32767600	Strong transcription	Rectal Mucosa Donor 29	rectum
50	chr12:32757600-32798000	Strong transcription	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links