Variant report

Variant	rs56160613
Chromosome Location	chr12:32933577-32933578
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10506096	1.00[AMR][1000 genomes]
rs16920084	1.00[AMR][1000 genomes]
rs16920116	1.00[AMR][1000 genomes]
rs16920125	1.00[AMR][1000 genomes]
rs55653318	1.00[AMR][1000 genomes]
rs55961287	1.00[AMR][1000 genomes]
rs56231715	1.00[AMR][1000 genomes]
rs56671444	1.00[AMR][1000 genomes]
rs57389939	1.00[AMR][1000 genomes]
rs57842976	1.00[AMR][1000 genomes]
rs58682304	1.00[AMR][1000 genomes]
rs59670367	1.00[AMR][1000 genomes]
rs60243898	1.00[AMR][1000 genomes]
rs60330503	1.00[AMR][1000 genomes]
rs74072685	1.00[AMR][1000 genomes]
rs74072936	1.00[AMR][1000 genomes]
rs74072944	1.00[AMR][1000 genomes]
rs74072945	1.00[AMR][1000 genomes]
rs74073029	1.00[AMR][1000 genomes]
rs74073061	1.00[AMR][1000 genomes]
rs74073064	1.00[AMR][1000 genomes]
rs74073069	1.00[AMR][1000 genomes]
rs877129	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530421	chr12:32825335-33465991	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv1054440	chr12:32872999-33150460	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv532334	chr12:32884789-33034791	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	esv1851844	chr12:32929596-32953032	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:32925000-32938600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr12:32927200-32933800	Weak transcription	Stomach Mucosa	stomach
3	chr12:32929400-32937200	Weak transcription	NHEK	skin
4	chr12:32929400-32942200	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr12:32929600-32941600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr12:32929800-32941200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr12:32929800-32941600	Weak transcription	Fetal Intestine Small	intestine
8	chr12:32931400-32942200	Weak transcription	Left Ventricle	heart
9	chr12:32932000-32934200	Enhancers	Fetal Lung	lung
10	chr12:32932600-32934200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr12:32932800-32934000	Weak transcription	Ovary	ovary
12	chr12:32932800-32935800	Weak transcription	Fetal Heart	heart
13	chr12:32933200-32944800	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr12:32933400-32935200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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