Variant report
| Variant | rs74073069 |
|---|---|
| Chromosome Location | chr12:32824141-32824142 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:32815616..32817206-chr12:32823751..32825488,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs10506096 | 1.00[AMR][1000 genomes] |
| rs11832493 | 1.00[AMR][1000 genomes] |
| rs16920084 | 1.00[AMR][1000 genomes] |
| rs16920116 | 1.00[AMR][1000 genomes] |
| rs16920125 | 1.00[AMR][1000 genomes] |
| rs55653318 | 1.00[AMR][1000 genomes] |
| rs55765989 | 1.00[AMR][1000 genomes] |
| rs55961287 | 1.00[AMR][1000 genomes] |
| rs56160613 | 1.00[AMR][1000 genomes] |
| rs56231715 | 1.00[AMR][1000 genomes] |
| rs56671444 | 1.00[AMR][1000 genomes] |
| rs57389939 | 1.00[AMR][1000 genomes] |
| rs58682304 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59023860 | 1.00[AMR][1000 genomes] |
| rs59450415 | 1.00[AMR][1000 genomes] |
| rs59670367 | 1.00[AMR][1000 genomes] |
| rs60243898 | 1.00[AMR][1000 genomes] |
| rs60330503 | 1.00[AMR][1000 genomes] |
| rs74072663 | 1.00[AMR][1000 genomes] |
| rs74072674 | 1.00[AMR][1000 genomes] |
| rs74072685 | 1.00[AMR][1000 genomes] |
| rs74072936 | 1.00[AMR][1000 genomes] |
| rs74072944 | 1.00[AMR][1000 genomes] |
| rs74072945 | 1.00[AMR][1000 genomes] |
| rs74073029 | 1.00[AMR][1000 genomes] |
| rs74073061 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74073064 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7975080 | 1.00[AMR][1000 genomes] |
| rs877129 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1047658 | chr12:32792554-32835646 | Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 2 | nsv541457 | chr12:32792554-32835646 | Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:32813400-32825400 | Weak transcription | Duodenum Smooth Muscle | Duodenum |
