Variant report

Variant	rs16926671
Chromosome Location	chr10:26487361-26487362
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs16926544	1.00[AMR][1000 genomes]
rs16926632	1.00[AMR][1000 genomes]
rs16926652	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16926674	1.00[AMR][1000 genomes]
rs16926677	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16926745	1.00[AMR][1000 genomes]
rs16926747	1.00[AMR][1000 genomes]
rs2051085	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2368124	1.00[AMR][1000 genomes]
rs4592324	1.00[AMR][1000 genomes]
rs7080297	1.00[AMR][1000 genomes]
rs7085789	1.00[AMR][1000 genomes]
rs7896603	1.00[AMR][1000 genomes]
rs7897779	1.00[AMR][1000 genomes]
rs7910941	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7914958	1.00[AMR][1000 genomes]
rs8190587	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8190623	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26474000-26491000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr10:26483200-26489000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr10:26483600-26488600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr10:26484800-26487400	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr10:26484800-26493400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr10:26486600-26493800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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