Variant report

Variant	rs16926745
Chromosome Location	chr10:26556117-26556118
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs16926632	1.00[AMR][1000 genomes]
rs16926652	1.00[AMR][1000 genomes]
rs16926671	1.00[AMR][1000 genomes]
rs16926674	1.00[AMR][1000 genomes]
rs16926677	1.00[AMR][1000 genomes]
rs16926747	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16926771	0.95[AFR][1000 genomes]
rs2051085	1.00[AMR][1000 genomes]
rs2368124	1.00[AMR][1000 genomes]
rs4592324	1.00[AMR][1000 genomes]
rs7080297	1.00[AMR][1000 genomes]
rs7896603	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7897779	1.00[AMR][1000 genomes]
rs7910941	1.00[AMR][1000 genomes]
rs7914958	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8190587	1.00[AMR][1000 genomes]
rs8190623	1.00[AMR][1000 genomes]
rs8190813	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26519200-26557800	Weak transcription	Brain Anterior Caudate	brain
2	chr10:26547000-26556800	Weak transcription	Brain Germinal Matrix	brain
3	chr10:26554400-26562200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr10:26555400-26557600	Weak transcription	Pancreatic Islets	Pancreatic Islet

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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