Variant report

Variant	rs7080297
Chromosome Location	chr10:26397035-26397036
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1568463	1.00[AMR][1000 genomes]
rs16926510	1.00[AMR][1000 genomes]
rs16926537	1.00[AMR][1000 genomes]
rs16926544	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16926632	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16926652	1.00[AMR][1000 genomes]
rs16926671	1.00[AMR][1000 genomes]
rs16926674	1.00[AMR][1000 genomes]
rs16926677	1.00[AMR][1000 genomes]
rs16926745	1.00[AMR][1000 genomes]
rs16926747	1.00[AMR][1000 genomes]
rs2051085	1.00[AMR][1000 genomes]
rs2368124	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4592324	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59118546	1.00[AMR][1000 genomes]
rs7085789	1.00[AMR][1000 genomes]
rs73610379	1.00[AMR][1000 genomes]
rs7896603	1.00[AMR][1000 genomes]
rs7897779	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7910941	1.00[AMR][1000 genomes]
rs7914958	1.00[AMR][1000 genomes]
rs7924249	1.00[AMR][1000 genomes]
rs8190587	1.00[AMR][1000 genomes]
rs8190623	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894975	chr10:26343356-27014467	Strong transcription Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26392800-26400600	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr10:26394400-26409800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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