Variant report

Variant	rs16928307
Chromosome Location	chr10:28102258-28102259
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11006718	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12098376	1.00[AMR][1000 genomes]
rs12098473	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1334721	1.00[AMR][1000 genomes]
rs16928237	0.81[AFR][1000 genomes]
rs16928281	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16928301	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16928302	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16928310	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16928362	1.00[AMR][1000 genomes]
rs16928371	1.00[AMR][1000 genomes]
rs16928373	1.00[AMR][1000 genomes]
rs16928382	1.00[AMR][1000 genomes]
rs16928385	1.00[AMR][1000 genomes]
rs16928388	1.00[AMR][1000 genomes]
rs56351836	1.00[AMR][1000 genomes]
rs59727990	1.00[AMR][1000 genomes]
rs73604063	0.81[AFR][1000 genomes]
rs73604069	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73604071	0.95[AFR][1000 genomes]
rs73604072	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73604074	1.00[AMR][1000 genomes]
rs73604075	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73604080	1.00[AMR][1000 genomes]
rs73604082	1.00[AMR][1000 genomes]
rs73604084	1.00[AMR][1000 genomes]
rs73604088	1.00[AMR][1000 genomes]
rs73604089	1.00[AMR][1000 genomes]
rs73604090	1.00[AMR][1000 genomes]
rs74127132	1.00[AMR][1000 genomes]
rs7918234	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831813	chr10:28017606-28200651	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv971859	chr10:28070066-28271252	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28100200-28104000	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr10:28101000-28108000	Weak transcription	Ovary	ovary

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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