Variant report
| Variant | rs16928373 |
|---|---|
| Chromosome Location | chr10:28158101-28158102 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs11006718 | 1.00[AMR][1000 genomes] |
| rs12098376 | 1.00[AMR][1000 genomes] |
| rs12098473 | 1.00[AMR][1000 genomes] |
| rs1334721 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16928281 | 1.00[AMR][1000 genomes] |
| rs16928301 | 1.00[AMR][1000 genomes] |
| rs16928302 | 1.00[AMR][1000 genomes] |
| rs16928307 | 1.00[AMR][1000 genomes] |
| rs16928310 | 1.00[AMR][1000 genomes] |
| rs16928362 | 1.00[AMR][1000 genomes] |
| rs16928371 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16928376 | 1.00[YRI][hapmap] |
| rs16928380 | 1.00[YRI][hapmap] |
| rs16928382 | 0.85[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16928385 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs16928388 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs56351836 | 1.00[AMR][1000 genomes] |
| rs59727990 | 1.00[AMR][1000 genomes] |
| rs73604069 | 1.00[AMR][1000 genomes] |
| rs73604072 | 1.00[AMR][1000 genomes] |
| rs73604074 | 1.00[AMR][1000 genomes] |
| rs73604075 | 1.00[AMR][1000 genomes] |
| rs73604080 | 1.00[AMR][1000 genomes] |
| rs73604082 | 1.00[AMR][1000 genomes] |
| rs73604084 | 1.00[AMR][1000 genomes] |
| rs73604088 | 0.95[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73604089 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73604090 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs74127132 | 1.00[AMR][1000 genomes] |
| rs7918234 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv831813 | chr10:28017606-28200651 | Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 2 | nsv917149 | chr10:28018919-28688694 | Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
| 3 | nsv971859 | chr10:28070066-28271252 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv550283 | chr10:28144330-28167326 | ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:28121000-28158600 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
| 2 | chr10:28154800-28158400 | Weak transcription | Breast Myoepithelial Primary Cells | Breast |
