Variant report

Variant	rs16928382
Chromosome Location	chr10:28166358-28166359
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11006718	1.00[AMR][1000 genomes]
rs12098376	1.00[AMR][1000 genomes]
rs12098473	1.00[AMR][1000 genomes]
rs1334721	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16928281	1.00[AMR][1000 genomes]
rs16928301	1.00[AMR][1000 genomes]
rs16928302	1.00[AMR][1000 genomes]
rs16928307	1.00[AMR][1000 genomes]
rs16928310	1.00[AMR][1000 genomes]
rs16928362	1.00[AMR][1000 genomes]
rs16928371	0.90[ASW][hapmap];1.00[LWK][hapmap];0.85[MKK][hapmap];0.90[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16928373	0.85[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16928376	0.90[ASW][hapmap];1.00[LWK][hapmap];0.85[MKK][hapmap];0.90[YRI][hapmap]
rs16928380	0.90[YRI][hapmap]
rs16928385	0.90[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16928388	0.89[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56351836	1.00[AMR][1000 genomes]
rs59727990	1.00[AMR][1000 genomes]
rs73604069	1.00[AMR][1000 genomes]
rs73604072	1.00[AMR][1000 genomes]
rs73604074	1.00[AMR][1000 genomes]
rs73604075	1.00[AMR][1000 genomes]
rs73604080	1.00[AMR][1000 genomes]
rs73604082	1.00[AMR][1000 genomes]
rs73604084	1.00[AMR][1000 genomes]
rs73604088	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73604089	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73604090	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74127132	1.00[AMR][1000 genomes]
rs7918234	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831813	chr10:28017606-28200651	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv971859	chr10:28070066-28271252	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv550283	chr10:28144330-28167326	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv894987	chr10:28165502-28326775	ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs16928382	FABP4	trans	brain	seeQTL
rs16928382	PPP4R4	trans	lymphoblastoid	seeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28161000-28181800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:28165600-28166400	Enhancers	Fetal Lung	lung

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