Variant report

Variant	rs16928385
Chromosome Location	chr10:28166403-28166404
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11006718	1.00[AMR][1000 genomes]
rs12098376	1.00[AMR][1000 genomes]
rs12098473	1.00[AMR][1000 genomes]
rs1334721	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16928281	1.00[AMR][1000 genomes]
rs16928301	1.00[AMR][1000 genomes]
rs16928302	1.00[AMR][1000 genomes]
rs16928307	1.00[AMR][1000 genomes]
rs16928310	1.00[AMR][1000 genomes]
rs16928362	1.00[AMR][1000 genomes]
rs16928371	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16928373	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16928376	1.00[YRI][hapmap]
rs16928380	1.00[YRI][hapmap]
rs16928382	0.90[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16928388	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56351836	1.00[AMR][1000 genomes]
rs59727990	1.00[AMR][1000 genomes]
rs73604069	1.00[AMR][1000 genomes]
rs73604072	1.00[AMR][1000 genomes]
rs73604074	1.00[AMR][1000 genomes]
rs73604075	1.00[AMR][1000 genomes]
rs73604080	1.00[AMR][1000 genomes]
rs73604082	1.00[AMR][1000 genomes]
rs73604084	1.00[AMR][1000 genomes]
rs73604088	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73604089	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73604090	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74127132	1.00[AMR][1000 genomes]
rs7918234	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831813	chr10:28017606-28200651	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv917149	chr10:28018919-28688694	Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv971859	chr10:28070066-28271252	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv550283	chr10:28144330-28167326	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv894987	chr10:28165502-28326775	ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28161000-28181800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr10:28166400-28167400	Weak transcription	Fetal Lung	lung
3	chr10:28166400-28168200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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